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Details for NP_441800.1_10

Name NP_441800.1_10
Length 20
Regular expression GG[GC][CG]A[TG][GTA]GG[CA][GA][GC]C[AT][TG]C[GT]T[TACGA]G
Central Yes

Motif logo

Genes containing this motif

76 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
slr0612 Reverse -45 -64 0.196116 0.293
sll1063 Reverse -293 -312 4.32602 0.252
slr1414 Forward -190 -171 0.294447 0.29
sll1319 Reverse -76 -95 0.491109 0.29
sll1656 Forward -229 -210 1.67108 0.255
sll1201 Forward -270 -251 0.196116 0.293
ssr2142 Reverse -278 -297 14.8474 0.096
slr1073 Forward -360 -341 0.884433 0.283
sll0648 Forward -201 -182 11.9958 0.103
sll1640 Reverse -218 -237 1.27776 0.267
slr2041 Reverse -348 -367 0.982764 0.283
slr2046 Forward -176 -157 2.65439 0.252
sll1292 Reverse -367 -386 2.55606 0.254
sll1121 Reverse -301 -320 19.9606 0.0532
sll1969 Reverse -348 -367 0.687771 0.283
ssl3335 Forward -256 -237 1.57275 0.255
slr1748 Forward -342 -323 0.687771 0.283
slr1232 Reverse -261 -280 3.6377 0.252
sll1352 Forward -324 -305 0.392778 0.29
sll0872 Reverse -294 -313 9.14423 0.211
sll1314 Reverse -105 -124 3.44104 0.252
slr1403 Forward -279 -260 3.44104 0.252
ssl3291 Reverse -70 -89 3.04771 0.252
slr1811 Reverse -213 -232 11.5042 0.103
slr1732 Forward -315 -296 0.58944 0.29
slr0852 Reverse -132 -151 3.24438 0.252
sll0856 Forward -367 -348 1.47442 0.255
sll0855 Reverse -15 -34 1.86774 0.255
slr1720 Forward -235 -216 1.0811 0.283
slr1721 Reverse -226 -245 0.687771 0.283
sll0248 Reverse -109 -128 2.85105 0.252
sll1883 Forward -214 -195 2.65439 0.252
sll1104 Forward -132 -113 5.70265 0.252
slr1677 Forward -331 -312 1.76941 0.255
slr1646 Reverse -224 -243 10.5209 0.146
sll0269 Reverse -34 -53 1.76941 0.255
sll0267 Forward -264 -245 1.86774 0.255
slr0145 Reverse -41 -60 3.24438 0.252
slr0146 Reverse -182 -201 0.392778 0.29
sll1853 Reverse -183 -202 0.392778 0.29
sll1848 Reverse -63 -82 0.786102 0.283
slr1939 Forward -222 -203 0.786102 0.283
slr1946 Forward -381 -362 4.52268 0.252
slr0359 Reverse -1 -20 0.491109 0.29
sll0771 Reverse -339 -358 13.2741 0.096
sll0766 Reverse -103 -122 12.9791 0.096
sll0755 Reverse -31 -50 2.16274 0.255
sll0024 Forward -300 -281 4.12936 0.252
sll0002 Reverse -236 -255 0.294447 0.29
slr0213 Forward -301 -282 0.294447 0.29
sll0408 Reverse -367 -386 2.3594 0.255
slr0435 Forward -351 -332 2.3594 0.255
ssr0102 Reverse -208 -227 2.0644 0.255
sll0683 Forward -114 -95 4.22769 0.252
slr0643 Reverse -345 -364 11.7008 0.103
sll0383 Reverse -171 -190 4.81767 0.252
slr0204 Forward -356 -337 3.73603 0.252
sll0830 Reverse -235 -254 3.04771 0.252
sll0597 Reverse -359 -378 8.65258 0.211
slr0615 Reverse -203 -222 2.26107 0.255
sll0671 Reverse -263 -282 1.76941 0.255
ssl1263 Reverse -367 -386 2.65439 0.252
ssl1255 Reverse -162 -181 1.47442 0.255
sll0026 Reverse -299 -318 1.76941 0.255
slr0527 Reverse -146 -165 0.884433 0.283
slr1454 Forward -312 -293 7.86593 0.247
slr0661 Forward -245 -226 1.37609 0.261
slr1588 Forward -346 -327 2.75272 0.252
sll0567 Reverse -30 -49 8.75091 0.211
slr0596 Forward -113 -94 8.75091 0.211
slr0608 Forward -308 -289 0.884433 0.283
sll7002 Reverse -204 -223 1.76941 0.255
ssl7039 Reverse -266 -285 3.6377 0.252
slr7041 Forward -94 -75 3.6377 0.252
slr7088 Reverse -323 -342 0.982764 0.283
6803t09 Forward -72 -53 1.57275 0.255
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

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