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Details for NP_441721.1_6

Name NP_441721.1_6
Length 20
Regular expression CA[AG]GT[GC]C[AG][CT]G[AC][GA][CT]T[GT]TTCCC
Central No

Motif logo

Genes containing this motif

25 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
sll1408 Forward -253 -234 8.16093 0.281
sll1401 Forward -346 -327 7.57094 0.281
sll0702 Forward -37 -18 7.96426 0.281
slr1416 Forward -33 -14 7.66927 0.281
slr0670 Forward -225 -206 7.27595 0.298
slr1603 Reverse -116 -135 9.14423 0.281
sll1751 Forward -355 -336 9.43923 0.281
slr1377 Reverse -197 -216 16.1257 0.219
sll1286 Reverse -116 -135 8.75091 0.281
sll1217 Reverse -321 -340 8.16093 0.281
slr0804 Forward -347 -328 8.16093 0.281
sll1442 Forward -254 -235 8.94757 0.281
sll1085 Forward -40 -21 7.57094 0.281
slr0941 Forward -300 -281 22.5172 0.034
sll1535 Forward -211 -192 10.8159 0.281
slr0444 Reverse -356 -375 7.7676 0.281
sll0325 Reverse -102 -121 7.57094 0.281
slr0342 Forward -121 -102 7.57094 0.281
slr0427 Reverse -236 -255 14.5524 0.267
slr0659 Forward -80 -61 8.16093 0.281
sll1108 Forward -168 -149 7.7676 0.281
slr1181 Reverse -289 -308 7.7676 0.281
slr1183 Forward -64 -45 11.3075 0.281
sll5044 Forward -241 -222 7.57094 0.281
ssl5045 Forward -32 -13 7.57094 0.281
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.000  1.000  0.000  0.000  
1.000 0.000 0.000 0.000
0.529 0.000 0.471 0.000
0.000 0.000 1.000 0.000
0.000 0.000 0.000 1.000
0.059 0.294 0.471 0.176
0.059 0.941 0.000 0.000
0.647 0.000 0.353 0.000
0.118 0.471 0.059 0.353
0.176 0.118 0.706 0.000
0.765 0.235 0.000 0.000
0.235 0.176 0.412 0.176
0.000 0.765 0.000 0.235
0.000 0.000 0.000 1.000
0.118 0.176 0.353 0.353
0.000 0.000 0.000 1.000
0.000 0.000 0.000 1.000
0.000 0.882 0.000 0.118
0.000 1.000 0.000 0.000
0.000 1.000 0.000 0.000