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Details for NP_441714.1_5

Name NP_441714.1_5
Length 20
Regular expression G[AC][AT]G[CGT]T[GT][ACT][CT]AA[AT][AC][CA][AC][CG][TC]A[CT][AT]
Central No

Motif logo

Genes containing this motif

3 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
sll1735 Reverse -34 -53 19.5708 0.276
sll0269 Reverse -73 -92 18.7978 0.276
slr0700 Forward -304 -285 19.3776 0.276
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.111  0.000  0.889  0.000  
0.778 0.222 0.000 0.000
0.667 0.000 0.000 0.333
0.000 0.111 0.889 0.000
0.000 0.556 0.222 0.222
0.111 0.000 0.000 0.889
0.000 0.000 0.556 0.444
0.444 0.222 0.111 0.222
0.000 0.444 0.111 0.444
1.000 0.000 0.000 0.000
0.889 0.000 0.111 0.000
0.778 0.000 0.000 0.222
0.667 0.333 0.000 0.000
0.222 0.556 0.111 0.111
0.778 0.222 0.000 0.000
0.000 0.778 0.222 0.000
0.111 0.222 0.000 0.667
0.889 0.000 0.111 0.000
0.111 0.444 0.000 0.444
0.778 0.000 0.000 0.222