Your browser is old and dusty. Try Google Chrome!

Details for NP_441698.1_3

Name NP_441698.1_3
Length 15
Regular expression T[CT][CA][TC]CT[AC][AC]CCC[AC][AT]AA
Central No

Motif logo

Genes containing this motif

10 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
slr1311 Forward -197 -183 18.3868 0.288
sll1005 Forward -181 -167 17.3052 0.288
slr1920 Reverse -224 -238 17.3052 0.288
sll1633 Forward -292 -278 17.1085 0.288
sll1432 Reverse -191 -205 19.2718 0.232
slr1534 Forward -378 -364 19.2718 0.232
slr0989 Forward -56 -42 19.5668 0.232
ssl7039 Forward -200 -186 17.0102 0.288
slr7041 Reverse -160 -174 17.0102 0.288
slr8030 Forward -266 -252 17.5018 0.288
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.111  0.000  0.000  0.889  
0.000 0.667 0.000 0.333
0.222 0.778 0.000 0.000
0.111 0.333 0.000 0.556
0.000 1.000 0.000 0.000
0.111 0.000 0.000 0.889
0.667 0.333 0.000 0.000
0.778 0.222 0.000 0.000
0.111 0.889 0.000 0.000
0.000 0.889 0.000 0.111
0.000 0.889 0.111 0.000
0.444 0.444 0.000 0.111
0.556 0.111 0.111 0.222
1.000 0.000 0.000 0.000
1.000 0.000 0.000 0.000