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Details for NP_441682.1_6

Name NP_441682.1_6
Length 20
Regular expression [GA][AC]T[GC][GT][TGC][GTA]C[GT][GA]T[TG][CTG]T[GCT][GT][AT]GG[AC]
Central No

Motif logo

Genes containing this motif

23 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
sll0221 Forward -293 -274 12.3892 0.291
sll1941 Reverse -118 -137 11.7992 0.291
slr2042 Forward -342 -323 11.7992 0.291
sll1283 Reverse -286 -305 14.0608 0.291
slr1547 Forward -233 -214 11.7008 0.291
ssr2611 Forward -217 -198 11.8975 0.291
sll1624 Forward -105 -86 13.0775 0.291
sll0853 Forward -115 -96 12.7825 0.291
sll1606 Reverse -355 -374 11.9958 0.291
smr0011 Forward -30 -11 11.3075 0.291
slr1469 Forward -177 -158 11.3075 0.291
slr1273 Forward -203 -184 13.9625 0.291
slr1689 Forward -210 -191 11.9958 0.291
sll0360 Reverse -314 -333 15.0441 0.291
slr0407 Forward -329 -310 11.4058 0.291
slr0435 Forward -323 -304 11.6025 0.291
slr0616 Reverse -346 -365 13.4708 0.291
sll1496 Forward -281 -262 19.174 0.291
slr1566 Forward -176 -157 16.3224 0.291
sll7003 Forward -178 -159 14.5524 0.291
slr7032 Reverse -63 -82 11.3075 0.291
ssl7039 Reverse -319 -338 12.1925 0.291
slr7041 Forward -41 -22 12.1925 0.291
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.200  0.000  0.800  0.000  
0.600 0.400 0.000 0.000
0.000 0.000 0.000 1.000
0.000 0.200 0.800 0.000
0.000 0.100 0.700 0.200
0.100 0.200 0.300 0.400
0.200 0.000 0.500 0.300
0.000 1.000 0.000 0.000
0.000 0.100 0.500 0.400
0.200 0.000 0.800 0.000
0.000 0.000 0.000 1.000
0.000 0.000 0.400 0.600
0.000 0.500 0.200 0.300
0.000 0.000 0.000 1.000
0.000 0.300 0.400 0.300
0.000 0.000 0.800 0.200
0.800 0.000 0.000 0.200
0.000 0.000 0.900 0.100
0.000 0.000 1.000 0.000
0.800 0.200 0.000 0.000