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Details for NP_441662.1_3

Name NP_441662.1_3
Length 20
Regular expression [AC][AC]TTTA[AG]GAAATT[TG]G[AT][AC]T[CT]A
Central No

Motif logo

Genes containing this motif

25 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
sll1397 Reverse -291 -310 8.14085 0.264
sll1049 Forward -215 -196 8.42796 0.264
slr0242 Forward -85 -66 9.385 0.264
sll1687 Reverse -120 -139 8.81077 0.264
sll1630 Forward -306 -287 8.04514 0.264
sll1956 Forward -271 -252 9.86352 0.264
sll1908 Reverse -232 -251 13.1175 0.264
slr1990 Forward -29 -10 13.1175 0.264
sll0018 Forward -29 -10 12.4475 0.264
sll0608 Reverse -124 -143 7.85374 0.264
slr0642 Forward -279 -260 7.85374 0.264
slr0193 Reverse -212 -231 11.2991 0.264
sll0821 Reverse -189 -208 8.81077 0.264
slr0847 Forward -260 -241 8.81077 0.264
slr0302 Reverse -20 -39 8.81077 0.264
slr1425 Forward -223 -204 8.23655 0.264
ssl7038 Forward -340 -321 8.52366 0.264
ssl7039 Forward -39 -20 8.52366 0.264
ssr7040 Reverse -79 -98 8.52366 0.264
slr7041 Reverse -321 -340 8.52366 0.264
slr6110 Forward -97 -78 9.385 0.264
slr6022 Forward -184 -165 12.7346 0.264
ssr6024 Reverse -137 -156 7.75803 0.264
slr6081 Forward -184 -165 12.7346 0.264
ssr6083 Reverse -137 -156 7.75803 0.264
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.500  0.500  0.000  0.000  
0.667 0.333 0.000 0.000
0.000 0.000 0.000 1.000
0.000 0.000 0.000 1.000
0.000 0.000 0.000 1.000
1.000 0.000 0.000 0.000
0.500 0.000 0.333 0.167
0.000 0.167 0.833 0.000
0.833 0.167 0.000 0.000
1.000 0.000 0.000 0.000
1.000 0.000 0.000 0.000
0.000 0.000 0.000 1.000
0.167 0.000 0.167 0.667
0.000 0.000 0.333 0.667
0.167 0.000 0.667 0.167
0.500 0.000 0.000 0.500
0.500 0.333 0.167 0.000
0.000 0.000 0.000 1.000
0.000 0.500 0.000 0.500
1.000 0.000 0.000 0.000