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Details for NP_441653.1_6

Name NP_441653.1_6
Length 15
Regular expression [CT]GTTG[GC]A[AG]TGG[AG][GC]GC
Central Yes

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Genes containing this motif

4 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
sll1401 Forward -305 -291 23.4024 0.0221
sll1623 Forward -212 -198 18.8791 0.289
sll1089 Reverse -139 -153 18.8791 0.289
sll0794 Reverse -141 -155 20.0591 0.272
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

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PSPM

0.000  0.714  0.000  0.286  
0.000 0.000 0.857 0.143
0.143 0.143 0.000 0.714
0.143 0.000 0.000 0.857
0.000 0.000 1.000 0.000
0.000 0.429 0.571 0.000
0.857 0.000 0.000 0.143
0.714 0.000 0.286 0.000
0.143 0.000 0.000 0.857
0.000 0.000 1.000 0.000
0.143 0.143 0.714 0.000
0.429 0.143 0.429 0.000
0.000 0.286 0.714 0.000
0.000 0.143 0.857 0.000
0.000 1.000 0.000 0.000