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Details for NP_441644.1_1

Name NP_441644.1_1
Length 20
Regular expression [TC]T[ACG]A[TG][GC]GG[ACG]GG[ATC]GG[GCA]TT[TC]C[GT]
Central Yes

Motif logo

Genes containing this motif

11 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
slr1293 Reverse -237 -256 15.2408 0.15
slr2045 Reverse -266 -285 13.7658 0.15
slr1395 Forward -172 -153 18.289 0.0912
slr0875 Forward -285 -266 13.7658 0.15
slr1455 Forward -354 -335 14.6508 0.15
slr1566 Forward -104 -85 28.8104 0.00102
ssl5100 Reverse -109 -128 15.1424 0.15
slr5101 Forward -112 -93 15.1424 0.15
ssl7039 Reverse -201 -220 12.8808 0.15
slr7041 Forward -159 -140 12.8808 0.15
slr7060 Forward -393 -374 9.83255 0.282
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.077  0.308  0.000  0.615  
0.000 0.000 0.000 1.000
0.385 0.385 0.231 0.000
1.000 0.000 0.000 0.000
0.000 0.000 0.462 0.538
0.000 0.385 0.462 0.154
0.000 0.000 1.000 0.000
0.000 0.000 1.000 0.000
0.308 0.308 0.231 0.154
0.000 0.000 1.000 0.000
0.000 0.000 1.000 0.000
0.385 0.231 0.000 0.385
0.154 0.000 0.846 0.000
0.000 0.000 1.000 0.000
0.231 0.308 0.385 0.077
0.000 0.000 0.000 1.000
0.000 0.000 0.000 1.000
0.000 0.231 0.000 0.769
0.000 0.923 0.077 0.000
0.000 0.000 0.538 0.462