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Details for NP_441631.1_4

Name NP_441631.1_4
Length 20
Regular expression [AG]C[CA][AC][CA]G[TG]G[CG]T[GT]GG[GC]A[AT][TC]C[CT][CG]
Central Yes

Motif logo

Genes containing this motif

11 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
sll1040 Reverse -303 -322 17.3057 0.133
sll1503 Reverse -288 -307 12.2908 0.293
sll1921 Forward -377 -358 23.7955 0.0321
slr1897 Forward -239 -220 12.7825 0.273
sll1461 Reverse -177 -196 13.5691 0.228
sll1702 Forward -311 -292 15.4374 0.17
sll1182 Forward -164 -145 14.6508 0.17
sll0021 Forward -139 -120 17.699 0.133
slr0607 Reverse -316 -335 17.0107 0.133
ssl7039 Forward -179 -160 14.7491 0.17
slr7041 Reverse -181 -200 14.7491 0.17
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.750  0.000  0.250  0.000  
0.000 0.875 0.125 0.000
0.375 0.625 0.000 0.000
0.500 0.500 0.000 0.000
0.375 0.500 0.125 0.000
0.125 0.000 0.875 0.000
0.000 0.000 0.250 0.750
0.000 0.000 1.000 0.000
0.125 0.500 0.375 0.000
0.000 0.000 0.000 1.000
0.000 0.125 0.500 0.375
0.125 0.000 0.875 0.000
0.000 0.000 1.000 0.000
0.000 0.250 0.750 0.000
1.000 0.000 0.000 0.000
0.750 0.000 0.000 0.250
0.000 0.375 0.000 0.625
0.000 0.750 0.125 0.125
0.000 0.750 0.000 0.250
0.000 0.750 0.250 0.000