Your browser is old and dusty. Try Google Chrome!

Details for NP_441626.1_4

Name NP_441626.1_4
Length 20
Regular expression [TG][CG]CGG[CG]A[GTA][GA]G[CTA][CG]TC[CG][GAT][CG][AG][AGT]T
Central Yes

Motif logo

Genes containing this motif

16 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
slr1490 Reverse -235 -254 13.7658 0.184
slr1291 Forward -282 -263 14.7491 0.167
slr1851 Reverse -148 -167 16.0274 0.156
slr2027 Reverse -158 -177 14.4541 0.167
slr1869 Forward -236 -217 14.7491 0.167
slr1808 Forward -128 -109 12.4875 0.243
sll1254 Reverse -205 -224 17.109 0.111
sll0269 Reverse -320 -339 13.6675 0.184
sll0266 Reverse -303 -322 14.3558 0.167
sll0833 Reverse -82 -101 12.3892 0.243
sll0098 Forward -338 -319 13.5691 0.184
slr0661 Reverse -371 -390 20.4523 0.056
sll5076 Forward -148 -129 15.0441 0.167
sll5123 Forward -191 -172 14.7491 0.167
sll8002 Reverse -323 -342 21.3373 0.056
ssl8003 Reverse -105 -124 21.3373 0.056
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.000  0.000  0.375  0.625  
0.000 0.625 0.375 0.000
0.000 1.000 0.000 0.000
0.000 0.000 1.000 0.000
0.000 0.000 1.000 0.000
0.000 0.750 0.250 0.000
1.000 0.000 0.000 0.000
0.250 0.000 0.375 0.375
0.375 0.125 0.500 0.000
0.000 0.000 1.000 0.000
0.250 0.375 0.000 0.375
0.000 0.625 0.375 0.000
0.000 0.125 0.000 0.875
0.000 1.000 0.000 0.000
0.000 0.750 0.250 0.000
0.250 0.125 0.375 0.250
0.000 0.500 0.500 0.000
0.625 0.125 0.250 0.000
0.375 0.000 0.375 0.250
0.125 0.000 0.000 0.875