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Details for NP_441579.1_8

Name NP_441579.1_8
Length 20
Regular expression [CG]CC[TC]A[TAC][CT][GTC][CG]AT[CGA][GA][CT][CG]A[TA][CA]C[GC]
Central Yes

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Genes containing this motif

5 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
slr2125 Reverse -293 -312 18.2882 0.278
slr0941 Forward -104 -85 18.0915 0.278
sll0905 Reverse -344 -363 18.7798 0.278
ssl7039 Forward -191 -172 22.8114 0.0308
slr7041 Reverse -169 -188 22.8114 0.0308
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

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PSPM

0.000  0.600  0.267  0.133  
0.000 1.000 0.000 0.000
0.133 0.667 0.067 0.133
0.000 0.400 0.000 0.600
0.867 0.000 0.133 0.000
0.333 0.267 0.000 0.400
0.000 0.667 0.000 0.333
0.000 0.200 0.400 0.400
0.000 0.533 0.467 0.000
0.933 0.000 0.067 0.000
0.067 0.000 0.000 0.933
0.267 0.400 0.333 0.000
0.400 0.000 0.600 0.000
0.000 0.733 0.000 0.267
0.000 0.667 0.200 0.133
0.933 0.067 0.000 0.000
0.467 0.000 0.000 0.533
0.267 0.467 0.133 0.133
0.000 0.867 0.133 0.000
0.000 0.200 0.800 0.000