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Details for NP_441557.1_2

Name NP_441557.1_2
Length 19
Regular expression G[AC][TG][TC]T[AC]CCC[TA]A[GCT]CCC[AT]C[TC]G
Central No

Motif logo

Genes containing this motif

25 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
sll1641 Reverse -177 -195 14.2771 0.288
slr1767 Forward -202 -184 14.2771 0.288
sll1937 Reverse -132 -150 17.8171 0.178
slr1149 Reverse -295 -313 15.3588 0.288
sll1121 Forward -151 -133 18.407 0.178
slr1540 Forward -380 -362 19.7837 0.178
slr0867 Reverse -204 -222 15.7521 0.264
sll1886 Forward -193 -175 18.997 0.178
sll1878 Forward -243 -225 18.5054 0.178
sll1387 Forward -183 -165 15.9488 0.263
slr0151 Forward -235 -217 14.2771 0.288
slr0326 Reverse -61 -79 14.2771 0.288
slr0185 Forward -192 -174 13.9821 0.288
slr0360 Reverse -107 -125 17.7187 0.178
sll0109 Reverse -90 -108 17.4237 0.178
slr0626 Forward -108 -90 17.4237 0.178
sll0505 Forward -344 -326 14.5721 0.288
sll1482 Reverse -97 -115 13.8838 0.288
slr0747 Reverse -368 -386 13.8838 0.288
ssl7039 Reverse -301 -319 16.2438 0.253
slr7041 Forward -59 -41 16.2438 0.253
sll7043 Forward -67 -49 14.0805 0.288
ssl8008 Forward -236 -218 19.882 0.178
slr6031 Forward -333 -315 14.6705 0.288
slr6090 Forward -333 -315 14.6705 0.288
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.000  0.000  1.000  0.000  
0.364 0.364 0.091 0.182
0.000 0.000 0.364 0.636
0.000 0.364 0.000 0.636
0.182 0.000 0.000 0.818
0.545 0.273 0.091 0.091
0.091 0.727 0.000 0.182
0.000 0.818 0.000 0.182
0.000 1.000 0.000 0.000
0.364 0.000 0.182 0.455
1.000 0.000 0.000 0.000
0.091 0.273 0.364 0.273
0.091 0.909 0.000 0.000
0.000 1.000 0.000 0.000
0.000 0.909 0.091 0.000
0.364 0.182 0.091 0.364
0.091 0.727 0.091 0.091
0.000 0.273 0.182 0.545
0.182 0.000 0.818 0.000