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Details for NP_441549.1_1

Name NP_441549.1_1
Length 20
Regular expression [CT]CG[TC]C[AC][TC]C[AT]G[GA][CGT]T[GC][AG][AT][GT][GC]CC
Central No

Motif logo

Genes containing this motif

21 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
sll0704 Forward -299 -280 14.0599 0.281
sll0699 Reverse -303 -322 18.8781 0.187
sll0216 Forward -379 -360 14.0599 0.281
slr1910 Forward -328 -309 17.6982 0.187
slr1363 Forward -214 -195 21.0414 0.187
slr1364 Reverse -205 -224 13.7649 0.281
sll1694 Reverse -230 -249 17.5015 0.187
slr2094 Forward -285 -266 18.8781 0.187
sll1245 Reverse -330 -349 13.6666 0.281
sll1868 Forward -394 -375 17.8948 0.187
sll1377 Forward -120 -101 13.9616 0.281
slr1478 Reverse -49 -68 13.9616 0.281
slr1287 Reverse -94 -113 14.3549 0.281
slr0399 Forward -383 -364 14.3549 0.281
slr0069 Forward -368 -349 15.5349 0.281
sll0539 Forward -260 -241 13.7649 0.281
sll1499 Forward -47 -28 17.4032 0.187
ssl7039 Reverse -256 -275 13.8633 0.281
slr7041 Forward -104 -85 13.8633 0.281
slr7097 Reverse -300 -319 17.1082 0.187
6803t35 Reverse -190 -209 14.9449 0.281
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.000  0.769  0.000  0.231  
0.077 0.769 0.154 0.000
0.077 0.000 0.769 0.154
0.154 0.231 0.154 0.462
0.000 1.000 0.000 0.000
0.538 0.308 0.154 0.000
0.000 0.308 0.077 0.615
0.000 1.000 0.000 0.000
0.692 0.000 0.000 0.308
0.077 0.000 0.923 0.000
0.231 0.000 0.769 0.000
0.000 0.462 0.308 0.231
0.000 0.000 0.000 1.000
0.000 0.308 0.692 0.000
0.692 0.000 0.231 0.077
0.692 0.077 0.000 0.231
0.000 0.154 0.615 0.231
0.000 0.231 0.769 0.000
0.000 0.923 0.077 0.000
0.154 0.692 0.000 0.154