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Details for NP_441537.1_3

Name NP_441537.1_3
Length 15
Regular expression A[AG]T[CA][AG]ATTTT[CA]AAGC
Central No

Motif logo

Genes containing this motif

18 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
sll1405 Reverse -291 -305 18.2885 0.18
sll1405 Forward -298 -284 14.3553 0.264
sll1401 Reverse -129 -143 20.2551 0.18
slr0734 Reverse -339 -353 14.7486 0.264
sll1683 Forward -63 -49 14.3553 0.264
slr1300 Forward -363 -349 17.3052 0.208
sll1308 Forward -125 -111 18.5835 0.18
slr1406 Reverse -267 -281 18.5835 0.18
slr1734 Reverse -168 -182 16.3219 0.254
sll1428 Reverse -329 -343 18.8785 0.18
slr1503 Forward -67 -53 18.8785 0.18
slr1515 Reverse -122 -136 17.6002 0.208
sll1231 Reverse -365 -379 21.2384 0.18
sll1892 Reverse -346 -360 13.5686 0.271
slr1980 Forward -273 -259 15.6336 0.264
sll0274 Reverse -152 -166 15.0436 0.264
sll0379 Forward -168 -154 19.6651 0.18
ssl1045 Forward -352 -338 13.7653 0.264
slr0574 Reverse -57 -71 13.7653 0.264
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

1.000  0.000  0.000  0.000  
0.667 0.000 0.333 0.000
0.167 0.000 0.167 0.667
0.333 0.667 0.000 0.000
0.667 0.000 0.333 0.000
0.833 0.000 0.000 0.167
0.000 0.000 0.000 1.000
0.000 0.000 0.000 1.000
0.000 0.000 0.000 1.000
0.167 0.167 0.000 0.667
0.333 0.667 0.000 0.000
0.833 0.167 0.000 0.000
1.000 0.000 0.000 0.000
0.000 0.167 0.833 0.000
0.000 1.000 0.000 0.000