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Details for NP_441427.1_5

Name NP_441427.1_5
Length 20
Regular expression GG[TA]GA[TC]TT[CT][ACG][TC][CGT]AT[TC]CC[TC][GA]G
Central Yes

Motif logo

Genes containing this motif

28 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
sll1395 Forward -186 -167 7.47261 0.291
sll1393 Reverse -96 -115 7.66927 0.291
slr1772 Forward -388 -369 7.7676 0.291
slr1778 Forward -53 -34 7.96426 0.291
sll1659 Forward -381 -362 9.83255 0.277
slr1799 Reverse -368 -387 9.83255 0.277
slr1910 Reverse -238 -257 8.94757 0.277
slr1023 Reverse -153 -172 15.2408 0.207
sll1579 Reverse -247 -266 8.55425 0.277
slr0879 Forward -359 -340 9.24257 0.277
sll1768 Forward -181 -162 14.9458 0.207
ssr2554 Forward -302 -283 7.57094 0.291
sml0008 Forward -353 -334 27.6305 0.00202
sll1878 Reverse -183 -202 13.4708 0.275
slr0148 Reverse -142 -161 9.63589 0.277
sll0147 Forward -184 -165 11.7992 0.275
sll0683 Forward -107 -88 8.16093 0.291
ssr1527 Forward -374 -355 8.94757 0.277
slr0559 Reverse -44 -63 16.0274 0.207
sll0098 Forward -370 -351 9.73422 0.277
slr0108 Forward -340 -321 8.55425 0.277
sll0660 Reverse -227 -246 8.94757 0.277
slr0713 Forward -73 -54 8.94757 0.277
sll0658 Reverse -114 -133 12.0942 0.275
ssl7039 Reverse -298 -317 11.9958 0.275
slr7041 Forward -62 -43 11.9958 0.275
sll8049 Reverse -216 -235 7.57094 0.291
6803t36 Forward -229 -210 8.55425 0.277
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.000  0.000  1.000  0.000  
0.000 0.000 1.000 0.000
0.211 0.158 0.000 0.632
0.000 0.000 1.000 0.000
1.000 0.000 0.000 0.000
0.105 0.368 0.000 0.526
0.000 0.000 0.000 1.000
0.000 0.000 0.000 1.000
0.000 0.579 0.000 0.421
0.421 0.211 0.211 0.158
0.000 0.211 0.000 0.789
0.053 0.474 0.263 0.211
0.684 0.105 0.053 0.158
0.105 0.000 0.000 0.895
0.000 0.316 0.053 0.632
0.000 1.000 0.000 0.000
0.000 1.000 0.000 0.000
0.105 0.368 0.000 0.526
0.474 0.000 0.526 0.000
0.000 0.000 1.000 0.000