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Details for NP_441425.1_4

Name NP_441425.1_4
Length 15
Regular expression [AG]A[AT]G[GA][AT]AA[CA]ATT[AG][AG][AC]
Central No

Motif logo

Genes containing this motif

58 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
sll1407 Forward -99 -85 14.5526 0.282
sll1397 Forward -257 -243 14.8476 0.282
slr1120 Reverse -100 -114 15.0442 0.282
sll1327 Forward -29 -15 15.0442 0.282
sll1662 Forward -41 -27 13.8643 0.282
slr1798 Reverse -190 -204 13.8643 0.282
slr1295 Reverse -218 -232 14.3559 0.282
slr1082 Reverse -151 -165 14.0609 0.282
sll0648 Reverse -380 -394 16.3225 0.282
slr1056 Forward -173 -159 13.7659 0.282
sll1006 Forward -237 -223 14.5526 0.282
slr1907 Reverse -377 -391 15.9292 0.282
slr1915 Reverse -70 -84 14.9459 0.282
slr1920 Reverse -116 -130 14.5526 0.282
slr1138 Forward -170 -156 14.9459 0.282
slr1203 Reverse -153 -167 14.6509 0.282
slr1543 Forward -247 -233 15.3392 0.282
slr1550 Reverse -11 -25 16.4209 0.282
ssr2047 Forward -361 -347 14.6509 0.282
slr1407 Forward -139 -125 16.8142 0.282
slr1861 Forward -138 -124 19.6658 0.282
slr0867 Reverse -107 -121 15.5359 0.282
slr0272 Reverse -89 -103 17.7975 0.282
slr0820 Forward -288 -274 16.8142 0.282
slr1975 Forward -287 -273 17.2075 0.282
sll1173 Reverse -27 -41 14.8476 0.282
slr1278 Forward -40 -26 14.8476 0.282
slr1163 Forward -170 -156 18.3875 0.282
slr0957 Forward -389 -375 17.4042 0.282
sll0330 Reverse -236 -250 15.8309 0.282
slr0383 Forward -387 -373 15.8309 0.282
slr0012 Forward -19 -5 15.5359 0.282
sll0609 Reverse -225 -239 16.2242 0.282
sll0381 Reverse -57 -71 17.7975 0.282
sll0821 Reverse -217 -231 15.5359 0.282
slr0847 Forward -232 -218 15.5359 0.282
sll0086 Forward -72 -58 18.7808 0.282
sll0504 Forward -214 -200 16.8142 0.282
sll0494 Forward -395 -381 16.6175 0.282
ssr1558 Forward -263 -249 14.5526 0.282
ssr2439 Reverse -325 -339 21.2391 0.132
slr1464 Reverse -152 -166 15.7325 0.282
sll1499 Forward -64 -50 15.2409 0.282
ssr2781 Forward -59 -45 13.5693 0.299
slr0603 Forward -203 -189 14.3559 0.282
ssl5007 Forward -383 -369 14.5526 0.282
ssl5007 Reverse -63 -77 13.7659 0.282
ssl5008 Forward -52 -38 14.5526 0.282
ssr5009 Reverse -132 -146 14.5526 0.282
ssl5091 Reverse -63 -77 13.7659 0.282
ssr5092 Forward -309 -295 13.7659 0.282
slr6021 Forward -188 -174 14.1593 0.282
ssr6030 Forward -31 -17 14.8476 0.282
sll6060 Reverse -173 -187 14.5526 0.282
ssl6061 Forward -253 -239 13.7659 0.282
ssr6062 Forward -383 -369 14.5526 0.282
ssr6062 Reverse -63 -77 13.7659 0.282
slr6080 Forward -188 -174 14.1593 0.282
ssr6089 Forward -31 -17 14.8476 0.282
6803t03 Reverse -21 -35 13.8643 0.282
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.750  0.000  0.250  0.000  
0.750 0.125 0.000 0.125
0.625 0.000 0.125 0.250
0.000 0.000 1.000 0.000
0.375 0.000 0.625 0.000
0.750 0.000 0.000 0.250
1.000 0.000 0.000 0.000
1.000 0.000 0.000 0.000
0.250 0.750 0.000 0.000
0.875 0.000 0.000 0.125
0.000 0.000 0.000 1.000
0.000 0.000 0.125 0.875
0.625 0.000 0.250 0.125
0.625 0.000 0.250 0.125
0.750 0.250 0.000 0.000