Your browser is old and dusty. Try Google Chrome!

Details for NP_441358.1_4

Name NP_441358.1_4
Length 20
Regular expression AG[AT]T[CA][AG][TA]G[AG][GAC]C[AT][GA][GCT]TT[CG]AAA
Central No

Motif logo

Genes containing this motif

4 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
ssl7038 Forward -361 -342 21.0414 0.0652
ssl7039 Forward -60 -41 21.0414 0.0652
ssr7040 Reverse -58 -77 21.0414 0.0652
slr7041 Reverse -300 -319 21.0414 0.0652
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

1.000  0.000  0.000  0.000  
0.000 0.000 0.857 0.143
0.714 0.000 0.000 0.286
0.000 0.143 0.000 0.857
0.286 0.429 0.143 0.143
0.714 0.000 0.286 0.000
0.429 0.000 0.000 0.571
0.000 0.000 0.857 0.143
0.714 0.000 0.286 0.000
0.286 0.286 0.429 0.000
0.000 1.000 0.000 0.000
0.429 0.143 0.143 0.286
0.286 0.143 0.571 0.000
0.000 0.286 0.429 0.286
0.000 0.143 0.000 0.857
0.000 0.000 0.000 1.000
0.000 0.714 0.286 0.000
0.857 0.000 0.000 0.143
0.714 0.143 0.143 0.000
1.000 0.000 0.000 0.000