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Details for NP_441343.1_5

Name NP_441343.1_5
Length 20
Regular expression TA[AG]AT[GA]TCAAA[GA]GC[CG]C[TG]TTC
Central No

Motif logo

Genes containing this motif

3 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
slr0374 Reverse -326 -345 20.4523 0.0238
ssl7039 Forward -292 -273 10.7175 0.212
slr7041 Reverse -68 -87 10.7175 0.212
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.000  0.000  0.111  0.889  
1.000 0.000 0.000 0.000
0.556 0.000 0.444 0.000
1.000 0.000 0.000 0.000
0.000 0.000 0.000 1.000
0.333 0.000 0.667 0.000
0.000 0.000 0.000 1.000
0.000 1.000 0.000 0.000
1.000 0.000 0.000 0.000
1.000 0.000 0.000 0.000
0.889 0.000 0.000 0.111
0.222 0.111 0.556 0.111
0.000 0.000 1.000 0.000
0.000 0.889 0.000 0.111
0.000 0.556 0.333 0.111
0.000 0.889 0.111 0.000
0.000 0.000 0.333 0.667
0.000 0.000 0.000 1.000
0.000 0.000 0.000 1.000
0.000 1.000 0.000 0.000