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Details for NP_441270.1_4

Name NP_441270.1_4
Length 20
Regular expression C[TAG][AGC]C[AT][CG]CA[GA][CG][AG][AC][TC][CT]CG[TAC]C[TCG]A
Central No

Motif logo

Genes containing this motif

10 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
sll1401 Forward -40 -21 19.4681 0.245
slr1253 Forward -285 -266 14.5516 0.251
slr1959 Reverse -349 -368 16.3215 0.245
sll0189 Forward -241 -222 15.8299 0.245
sll0189 Forward -331 -312 14.6499 0.251
slr0833 Reverse -176 -195 15.3382 0.245
slr0550 Reverse -75 -94 15.1416 0.245
slr1418 Forward -398 -379 16.7149 0.245
slr7010 Reverse -176 -195 15.1416 0.245
sll8011 Forward -306 -287 17.8948 0.245
ssr8013 Reverse -212 -231 17.8948 0.245
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.000  1.000  0.000  0.000  
0.300 0.000 0.300 0.400
0.400 0.200 0.400 0.000
0.100 0.900 0.000 0.000
0.700 0.100 0.000 0.200
0.000 0.700 0.300 0.000
0.000 1.000 0.000 0.000
1.000 0.000 0.000 0.000
0.400 0.000 0.600 0.000
0.000 0.800 0.200 0.000
0.700 0.100 0.200 0.000
0.500 0.400 0.100 0.000
0.000 0.400 0.000 0.600
0.000 0.600 0.000 0.400
0.100 0.800 0.000 0.100
0.000 0.100 0.900 0.000
0.300 0.200 0.100 0.400
0.000 1.000 0.000 0.000
0.000 0.300 0.300 0.400
0.900 0.000 0.000 0.100