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Details for NP_441259.1_7

Name NP_441259.1_7
Length 19
Regular expression GC[GA][AG]AG[TG]T[GA]G[TC]GGC[CG]A[CT][GA]A
Central No

Motif logo

Genes containing this motif

20 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
sll1667 Forward -302 -284 12.9005 0.291
slr1796 Reverse -377 -395 12.9005 0.291
slr0692 Forward -320 -302 20.8653 0.149
sll1510 Reverse -331 -349 16.0471 0.188
sll1802 Reverse -382 -400 14.0805 0.233
sll1801 Reverse -27 -45 14.0805 0.233
slr1517 Reverse -290 -308 15.6538 0.188
sll1258 Reverse -3 -21 16.8337 0.188
slr1641 Reverse -269 -287 16.8337 0.188
slr1645 Forward -322 -304 19.3903 0.149
sll0269 Reverse -42 -60 13.7855 0.233
sll0171 Forward -224 -206 13.7855 0.233
sll0166 Reverse -310 -328 14.9655 0.208
sll0062 Reverse -259 -277 15.6538 0.188
slr0059 Forward -378 -360 15.6538 0.188
sll0614 Reverse -86 -104 13.9821 0.233
ssl0738 Reverse -62 -80 15.7521 0.188
slr0299 Reverse -45 -63 15.4571 0.188
ssl1464 Forward -123 -105 19.292 0.149
ssl2874 Forward -330 -312 17.0304 0.188
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.000  0.000  1.000  0.000  
0.000 1.000 0.000 0.000
0.364 0.000 0.636 0.000
0.727 0.000 0.273 0.000
1.000 0.000 0.000 0.000
0.182 0.000 0.818 0.000
0.000 0.000 0.273 0.727
0.000 0.182 0.000 0.818
0.273 0.182 0.545 0.000
0.091 0.091 0.818 0.000
0.091 0.273 0.182 0.455
0.000 0.182 0.818 0.000
0.000 0.091 0.909 0.000
0.182 0.727 0.091 0.000
0.182 0.455 0.273 0.091
1.000 0.000 0.000 0.000
0.091 0.545 0.000 0.364
0.273 0.182 0.545 0.000
0.818 0.182 0.000 0.000