Your browser is old and dusty. Try Google Chrome!

Details for NP_441199.1_3

Name NP_441199.1_3
Length 19
Regular expression AT[GC]CCCCCAGGGGGGATAT
Central No

Motif logo

Genes containing this motif

59 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
slr0612 Reverse -336 -354 0.21581 0.231
slr1493 Reverse -56 -74 4.44404 0.231
sll1395 Reverse -325 -343 0.117479 0.231
slr1115 Forward -377 -359 0.707465 0.231
slr1414 Forward -74 -56 4.24738 0.231
slr1414 Reverse -58 -76 -1.75081 0.27
sll1041 Reverse -279 -297 -0.964162 0.27
sll1667 Reverse -299 -317 -2.73412 0.274
sll1667 Forward -315 -297 -2.93078 0.281
slr1796 Forward -380 -362 -2.73412 0.274
slr1796 Reverse -364 -382 -2.93078 0.281
sll1198 Reverse -124 -142 -2.24246 0.27
slr0670 Forward -25 -7 0.0191479 0.231
sll0647 Reverse -255 -273 -0.865831 0.27
sml0005 Forward -378 -360 1.19912 0.231
slr2013 Reverse -255 -273 -0.964162 0.27
slr1146 Forward -178 -160 2.28076 0.231
slr1147 Reverse -66 -84 2.28076 0.231
slr1195 Reverse -298 -316 -0.669169 0.27
slr1203 Forward -110 -92 7.00065 0.179
slr1235 Forward -215 -197 -2.73412 0.274
sll1270 Forward -47 -29 5.13236 0.231
sll1270 Reverse -32 -50 -2.14413 0.27
ssr1480 Forward -252 -234 0.21581 0.231
sll1708 Reverse -122 -140 2.77242 0.231
slr1805 Forward -49 -31 2.77242 0.231
sll1905 Forward -256 -238 2.47742 0.231
slr1999 Reverse -109 -127 -1.25915 0.27
slr2103 Forward -237 -219 0.117479 0.231
sll1260 Forward -388 -370 -2.3408 0.27
slr1336 Reverse -95 -113 -2.3408 0.27
slr1978 Forward -350 -332 0.21581 0.231
sll1432 Reverse -8 -26 2.37909 0.231
slr1533 Forward -175 -157 2.37909 0.231
sll1099 Forward -274 -256 9.65558 0.121
ssr1600 Reverse -141 -159 1.29745 0.231
slr0442 Reverse -336 -354 14.1788 0.0462
slr0442 Forward -352 -334 0.314141 0.231
slr0291 Forward -237 -219 7.19731 0.179
sll0944 Reverse -369 -387 0.314141 0.231
sll0021 Reverse -60 -78 0.21581 0.231
slr0224 Reverse -338 -356 9.85225 0.121
sll0385 Forward -265 -247 -1.35749 0.27
slr0565 Forward -399 -381 -2.14413 0.27
sll0597 Reverse -83 -101 4.05072 0.231
sll0586 Forward -233 -215 -0.0791831 0.231
slr0623 Reverse -131 -149 -0.0791831 0.231
slr0796 Reverse -37 -55 36.1066 0.00000557
slr0796 Forward -53 -35 14.6705 0.0462
slr0554 Forward -58 -40 1.88744 0.231
slr1451 Reverse -361 -379 -1.94747 0.27
sll1495 Reverse -51 -69 2.28076 0.231
slr1559 Forward -229 -211 2.28076 0.231
slr0757 Forward -174 -156 -2.73412 0.274
sll7028 Reverse -174 -192 -2.73412 0.274
sll7031 Reverse -382 -400 -0.472507 0.26
slr7032 Forward -331 -313 -0.472507 0.26
ssl8003 Forward -319 -301 0.904127 0.231
slr6005 Reverse -312 -330 1.10079 0.231
slr6028 Reverse -30 -48 -1.84914 0.27
slr6064 Reverse -312 -330 1.10079 0.231
slr6087 Reverse -30 -48 -1.84914 0.27
slr6107 Reverse -223 -241 2.77242 0.231
6803t18 Forward -91 -73 -2.3408 0.27
6803t31 Reverse -290 -308 1.59244 0.231
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

1.000  0.000  0.000  0.000  
0.000 0.000 0.000 1.000
0.000 0.429 0.571 0.000
0.000 1.000 0.000 0.000
0.000 1.000 0.000 0.000
0.000 1.000 0.000 0.000
0.000 0.857 0.000 0.143
0.000 0.714 0.143 0.143
0.714 0.143 0.143 0.000
0.000 0.000 0.857 0.143
0.143 0.000 0.857 0.000
0.000 0.000 1.000 0.000
0.000 0.000 1.000 0.000
0.000 0.000 1.000 0.000
0.000 0.143 0.857 0.000
1.000 0.000 0.000 0.000
0.000 0.000 0.000 1.000
1.000 0.000 0.000 0.000
0.000 0.000 0.000 1.000