Your browser is old and dusty. Try Google Chrome!

Details for NP_441118.1_2

Name NP_441118.1_2
Length 20
Regular expression GA[TC][CT]TA[CA]G[GTC][CT][AG][AC]A[AG][AG][GA]T[TGA][GA]T
Central Yes

Motif logo

Genes containing this motif

34 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
sll1401 Reverse -367 -386 13.2741 0.13
sll0700 Forward -338 -319 24.4839 0.000875
slr1616 Forward -83 -64 13.6675 0.12
sll0651 Forward -338 -319 24.4839 0.000875
sll1930 Forward -338 -319 24.4839 0.000875
slr1410 Forward -160 -141 10.3242 0.297
slr0857 Forward -338 -319 23.8939 0.00136
sll1611 Reverse -225 -244 24.4839 0.000875
slr1716 Forward -338 -319 24.4839 0.000875
sll1984 Forward -338 -319 24.4839 0.000875
slr2113 Forward -338 -319 24.4839 0.000875
sll1257 Forward -338 -319 24.4839 0.000875
sll1869 Forward -94 -75 11.2092 0.237
slr1984 Reverse -56 -75 11.2092 0.237
slr1267 Forward -283 -264 10.9142 0.253
slr1283 Forward -359 -340 15.7324 0.0549
sll1437 Forward -338 -319 24.4839 0.000875
slr1161 Reverse -237 -256 11.6025 0.228
sll1851 Reverse -118 -137 24.4839 0.000875
slr1937 Forward -338 -319 24.4839 0.000875
sll0317 Reverse -155 -174 24.4839 0.000875
sll0201 Forward -338 -319 24.4839 0.000875
sll0546 Reverse -63 -82 11.2092 0.237
sll0594 Forward -140 -121 13.6675 0.12
slr0703 Forward -325 -306 24.4839 0.000875
ssl1263 Reverse -178 -197 11.6025 0.228
slr0451 Reverse -2 -21 13.2741 0.13
ssr0817 Reverse -81 -100 24.4839 0.000875
slr0462 Reverse -368 -387 24.4839 0.000875
sll7103 Reverse -164 -183 24.4839 0.000875
slr7105 Forward -338 -319 24.4839 0.000875
sll8042 Forward -338 -319 24.4839 0.000875
slr8044 Reverse -91 -110 24.4839 0.000875
slr8046 Forward -338 -319 24.4839 0.000875
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.000  0.000  1.000  0.000  
1.000 0.000 0.000 0.000
0.000 0.481 0.000 0.519
0.000 0.519 0.000 0.481
0.000 0.000 0.019 0.981
0.704 0.019 0.185 0.093
0.296 0.704 0.000 0.000
0.000 0.000 1.000 0.000
0.093 0.259 0.370 0.278
0.093 0.500 0.167 0.241
0.722 0.000 0.241 0.037
0.630 0.241 0.019 0.111
1.000 0.000 0.000 0.000
0.630 0.000 0.370 0.000
0.722 0.000 0.278 0.000
0.352 0.000 0.648 0.000
0.019 0.000 0.000 0.981
0.222 0.000 0.241 0.537
0.426 0.000 0.574 0.000
0.000 0.000 0.000 1.000