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Details for NP_441011.1_9

Name NP_441011.1_9
Length 20
Regular expression [AG]CT[TG]TTTT[TG]CTTT[GT]GTT[AG][TG][CT]
Central Yes

Motif logo

Genes containing this motif

8 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
slr1240 Forward -362 -343 10.1275 0.277
sll1760 Forward -342 -323 23.4022 0.0229
sll1436 Forward -137 -118 16.2241 0.156
sll1562 Reverse -166 -185 12.6841 0.272
sll1479 Forward -131 -112 15.8307 0.156
sll5063 Reverse -356 -375 10.7175 0.277
6803r02 Reverse -235 -254 9.73422 0.277
6803r05 Reverse -235 -254 9.73422 0.277
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.500  0.000  0.500  0.000  
0.000 1.000 0.000 0.000
0.167 0.000 0.000 0.833
0.167 0.000 0.333 0.500
0.000 0.000 0.000 1.000
0.000 0.000 0.000 1.000
0.167 0.000 0.000 0.833
0.000 0.000 0.000 1.000
0.000 0.167 0.333 0.500
0.000 1.000 0.000 0.000
0.167 0.167 0.000 0.667
0.000 0.000 0.000 1.000
0.000 0.000 0.000 1.000
0.000 0.000 0.667 0.333
0.000 0.000 1.000 0.000
0.000 0.000 0.000 1.000
0.000 0.000 0.167 0.833
0.500 0.000 0.500 0.000
0.000 0.167 0.333 0.500
0.000 0.667 0.000 0.333