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Details for NP_440962.1_6

Name NP_440962.1_6
Length 18
Regular expression [GA][CA]TTA[GAT][CA][AT]TT[GCT]C[CGT][CT][AG]A[TA][TG]
Central Yes

Motif logo

Genes containing this motif

31 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
sll1064 Reverse -290 -307 12.6244 0.256
slr1101 Forward -52 -35 10.8545 0.292
slr0981 Forward -144 -127 11.6411 0.288
sll0634 Forward -84 -67 14.6894 0.242
slr0695 Reverse -222 -239 14.6894 0.242
sll1305 Forward -382 -365 24.5224 0.0306
sll1631 Forward -55 -38 14.1977 0.252
sll1601 Reverse -82 -99 12.2311 0.267
sll0247 Forward -276 -259 12.6244 0.256
slr0267 Reverse -234 -251 12.6244 0.256
sll1429 Forward -53 -36 13.3128 0.255
sll0817 Forward -222 -205 12.7228 0.256
sll0909 Reverse -145 -162 11.5428 0.288
slr0951 Forward -72 -55 11.5428 0.288
slr0407 Forward -143 -126 10.9528 0.292
slr0337 Forward -257 -240 14.1977 0.252
slr0380 Reverse -123 -140 15.181 0.242
sll0400 Forward -332 -315 10.8545 0.292
slr0838 Reverse -357 -374 20.6875 0.0862
sll0486 Forward -170 -153 20.5892 0.0862
sll0584 Reverse -97 -114 12.1328 0.267
slr0624 Forward -73 -56 12.1328 0.267
sll0783 Reverse -155 -172 11.1495 0.292
slr0801 Forward -310 -293 11.1495 0.292
sll0781 Reverse -1 -18 13.0178 0.256
ssl7020 Forward -84 -67 16.951 0.166
ssl7038 Reverse -374 -391 13.5094 0.252
ssl7039 Reverse -73 -90 13.5094 0.252
ssr7040 Forward -45 -28 13.5094 0.252
slr7041 Forward -287 -270 13.5094 0.252
6803t06 Reverse -98 -115 14.6894 0.242
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.400  0.000  0.600  0.000  
0.400 0.600 0.000 0.000
0.000 0.000 0.000 1.000
0.000 0.000 0.000 1.000
1.000 0.000 0.000 0.000
0.200 0.000 0.600 0.200
0.200 0.800 0.000 0.000
0.600 0.000 0.000 0.400
0.000 0.000 0.000 1.000
0.000 0.000 0.000 1.000
0.000 0.200 0.600 0.200
0.000 1.000 0.000 0.000
0.000 0.400 0.400 0.200
0.000 0.800 0.000 0.200
0.600 0.000 0.400 0.000
1.000 0.000 0.000 0.000
0.200 0.000 0.000 0.800
0.000 0.000 0.400 0.600