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Details for NP_440962.1_5

Name NP_440962.1_5
Length 11
Regular expression [GA]GTTTT[AC][CA]T[TC]T
Central No

Motif logo

Genes containing this motif

40 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
slr1311 Reverse -132 -142 16.9913 0.261
slr0728 Forward -254 -244 17.188 0.261
sll1318 Forward -110 -100 16.1063 0.289
slr0981 Reverse -40 -50 18.0729 0.248
slr1590 Reverse -52 -62 16.1063 0.289
slr1916 Reverse -176 -186 18.0729 0.248
ssl3093 Reverse -29 -39 16.1063 0.289
sll1791 Reverse -30 -40 16.6963 0.261
slr2076 Forward -12 -2 19.2529 0.248
slr1835 Forward -135 -125 18.3679 0.248
slr1545 Forward -85 -75 16.1063 0.289
sll1142 Reverse -39 -49 18.0729 0.248
slr1223 Forward -38 -28 18.0729 0.248
sll1305 Forward -146 -136 16.1063 0.289
ssr2078 Reverse -30 -40 16.6963 0.261
slr1248 Reverse -33 -43 16.1063 0.289
slr2107 Reverse -301 -311 18.9579 0.248
slr0809 Reverse -99 -109 18.3679 0.248
sll1892 Forward -283 -273 16.9913 0.261
slr1687 Forward -257 -247 16.6963 0.261
sll1557 Forward -23 -13 16.6963 0.261
slr0408 Reverse -237 -247 16.1063 0.289
sll0172 Reverse -74 -84 17.188 0.261
slr0378 Forward -271 -261 16.9913 0.261
sll0322 Forward -233 -223 16.6963 0.261
slr0903 Forward -125 -115 18.3679 0.248
sll0083 Reverse -236 -246 16.6963 0.261
sll0587 Forward -108 -98 18.3679 0.248
sll0789 Reverse -310 -320 18.0729 0.248
sll0788 Forward -130 -120 16.6963 0.261
slr0799 Reverse -92 -102 16.6963 0.261
slr1454 Forward -377 -367 18.0729 0.248
slr1573 Reverse -34 -44 18.3679 0.248
slr0758 Forward -50 -40 16.1063 0.289
sll0720 Reverse -185 -195 16.1063 0.289
sll1549 Reverse -222 -232 18.3679 0.248
slr1655 Forward -283 -273 18.3679 0.248
slr7025 Reverse -336 -346 19.2529 0.248
slr7097 Forward -180 -170 17.188 0.261
slr6040 Reverse -310 -320 18.0729 0.248
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.200  0.000  0.800  0.000  
0.000 0.000 1.000 0.000
0.000 0.000 0.000 1.000
0.000 0.000 0.000 1.000
0.000 0.000 0.000 1.000
0.000 0.000 0.000 1.000
0.600 0.400 0.000 0.000
0.400 0.600 0.000 0.000
0.000 0.000 0.000 1.000
0.000 0.200 0.000 0.800
0.000 0.000 0.000 1.000