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Details for NP_440929.1_9

Name NP_440929.1_9
Length 15
Regular expression CC[AT][GT][CGT]C[ACT]G[GT]CGGCCT
Central No

Motif logo

Genes containing this motif

20 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
sll0225 Reverse -378 -392 13.7659 0.279
sll0216 Forward -189 -175 13.4709 0.279
slr1414 Forward -218 -204 12.7826 0.279
sll1679 Reverse -279 -293 13.1759 0.279
sll1676 Reverse -164 -178 15.6342 0.279
slr0688 Reverse -92 -106 12.4876 0.298
sll1284 Forward -46 -32 13.9626 0.279
ssl3445 Forward -245 -231 14.4542 0.279
slr1829 Reverse -240 -254 20.9441 0.279
ssl1498 Forward -332 -318 13.7659 0.279
sll1263 Forward -80 -66 13.4709 0.279
slr1975 Reverse -350 -364 15.6342 0.279
slr1004 Reverse -78 -92 12.7826 0.279
slr0935 Forward -206 -192 12.7826 0.279
slr0056 Reverse -263 -277 13.7659 0.279
sll0690 Forward -138 -124 13.7659 0.279
sll0613 Forward -337 -323 12.7826 0.279
sll0535 Reverse -328 -342 12.4876 0.298
ssl7039 Forward -358 -344 12.9793 0.279
slr7041 Reverse -2 -16 12.9793 0.279
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.000  1.000  0.000  0.000  
0.000 1.000 0.000 0.000
0.667 0.000 0.000 0.333
0.000 0.000 0.667 0.333
0.000 0.333 0.333 0.333
0.000 1.000 0.000 0.000
0.333 0.333 0.000 0.333
0.000 0.167 0.833 0.000
0.000 0.000 0.667 0.333
0.000 1.000 0.000 0.000
0.167 0.167 0.667 0.000
0.000 0.000 1.000 0.000
0.000 1.000 0.000 0.000
0.000 1.000 0.000 0.000
0.000 0.000 0.000 1.000