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Details for NP_440920.1_1

Name NP_440920.1_1
Length 20
Regular expression T[GC]GT[GT]ATGGC[CT]GG[CAT]GGCACC
Central No

Motif logo

Genes containing this motif

29 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
slr1130 Forward -394 -375 6.78429 0.195
sll0708 Reverse -272 -291 11.6025 0.125
slr0737 Reverse -287 -306 10.6192 0.126
sll1039 Forward -188 -169 10.5209 0.126
slr1097 Reverse -96 -115 4.916 0.279
sll1023 Forward -294 -275 8.06259 0.176
slr1034 Forward -262 -243 6.78429 0.195
slr1150 Forward -346 -327 8.65258 0.169
ssl3446 Reverse -73 -92 4.62101 0.292
slr1841 Reverse -273 -292 10.9142 0.126
slr0879 Forward -384 -365 22.5172 0.00882
sll0872 Reverse -155 -174 11.6025 0.125
sll1699 Forward -306 -287 12.8808 0.125
slr1256 Forward -284 -265 13.7658 0.124
slr0808 Forward -172 -153 9.73422 0.139
slr1468 Reverse -89 -108 7.86593 0.176
sll1378 Forward -154 -135 8.75091 0.169
sll1098 Reverse -265 -284 11.9958 0.125
slr0370 Forward -330 -311 7.47261 0.176
slr0775 Forward -272 -253 6.29264 0.207
sll0408 Forward -242 -223 16.9124 0.0557
ssl0769 Forward -324 -305 7.57094 0.176
sll0055 Reverse -315 -334 5.99764 0.218
sll0613 Reverse -224 -243 7.66927 0.176
sll0609 Forward -171 -152 6.39097 0.207
slr0581 Forward -308 -289 23.4022 0.00882
sll0290 Forward -359 -340 7.96426 0.176
sll0289 Reverse -249 -268 10.3242 0.126
slr0609 Forward -351 -332 5.80098 0.223
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.000  0.125  0.000  0.875  
0.000 0.375 0.625 0.000
0.125 0.125 0.750 0.000
0.000 0.000 0.000 1.000
0.000 0.000 0.750 0.250
1.000 0.000 0.000 0.000
0.000 0.000 0.000 1.000
0.000 0.000 0.875 0.125
0.000 0.000 1.000 0.000
0.125 0.875 0.000 0.000
0.000 0.750 0.000 0.250
0.000 0.000 0.875 0.125
0.000 0.125 0.875 0.000
0.250 0.375 0.125 0.250
0.000 0.000 1.000 0.000
0.000 0.125 0.875 0.000
0.000 0.875 0.125 0.000
0.875 0.000 0.125 0.000
0.000 1.000 0.000 0.000
0.000 0.875 0.125 0.000