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Details for NP_440906.1_9

Name NP_440906.1_9
Length 20
Regular expression [CT][TC][GA][TAC][AT][GA]CCG[CGT]CA[GA][TAG][AC][CA][AC][AC][CA]A
Central No

Motif logo

Genes containing this motif

21 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
sll1401 Reverse -286 -305 14.4533 0.296
ssl2069 Forward -326 -307 12.1917 0.296
slr1608 Reverse -219 -238 13.5683 0.296
sll1817 Forward -86 -67 12.9783 0.296
sll1124 Forward -196 -177 19.2715 0.13
slr1549 Forward -392 -373 21.3364 0.13
sll1772 Reverse -260 -279 12.4867 0.296
sll0815 Reverse -336 -355 12.6833 0.296
slr1980 Forward -211 -192 12.88 0.296
slr0446 Forward -391 -372 13.2733 0.296
slr0152 Forward -53 -34 18.2882 0.13
slr0342 Reverse -318 -337 12.88 0.296
slr0588 Forward -337 -318 12.6833 0.296
sll7003 Reverse -206 -225 17.6982 0.13
ssl7004 Reverse -1 -20 17.6982 0.13
slr7005 Forward -366 -347 17.6982 0.13
ssl7038 Reverse -66 -85 12.29 0.296
ssr7040 Forward -353 -334 12.29 0.296
slr7054 Reverse -348 -367 16.9115 0.149
slr6029 Forward -71 -52 13.6666 0.296
slr6088 Forward -71 -52 13.6666 0.296
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.000  0.556  0.000  0.444  
0.000 0.444 0.000 0.556
0.222 0.000 0.778 0.000
0.333 0.222 0.000 0.444
0.556 0.000 0.000 0.444
0.333 0.000 0.556 0.111
0.000 1.000 0.000 0.000
0.000 0.889 0.000 0.111
0.000 0.000 0.889 0.111
0.000 0.444 0.333 0.222
0.000 1.000 0.000 0.000
0.889 0.111 0.000 0.000
0.222 0.000 0.778 0.000
0.222 0.111 0.222 0.444
0.667 0.222 0.111 0.000
0.222 0.778 0.000 0.000
0.667 0.333 0.000 0.000
0.778 0.222 0.000 0.000
0.333 0.667 0.000 0.000
1.000 0.000 0.000 0.000