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Details for NP_440903.1_1

Name NP_440903.1_1
Length 11
Regular expression [TG][TG]G[TA]GTGAG[GC]A
Central No

Motif logo

Genes containing this motif

13 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
sll1406 Forward -17 -7 18.2696 0.14
sll1837 Reverse -248 -258 18.2696 0.14
slr1912 Forward -17 -7 18.2696 0.14
sll1758 Forward -21 -11 18.2696 0.14
ssr3184 Reverse -147 -157 18.2696 0.14
slr1732 Forward -231 -221 16.4996 0.287
ssl3769 Forward -324 -314 17.7779 0.16
slr1974 Reverse -174 -184 16.4996 0.287
slr0199 Forward -126 -116 17.7779 0.16
sll0586 Forward -178 -168 17.5813 0.185
slr0623 Reverse -186 -196 17.5813 0.185
sll0737 Reverse -88 -98 17.7779 0.16
sll0896 Forward -55 -45 16.6963 0.275
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.000  0.111  0.333  0.556  
0.000 0.000 0.333 0.667
0.000 0.000 0.889 0.111
0.222 0.000 0.000 0.778
0.000 0.111 0.889 0.000
0.000 0.000 0.000 1.000
0.111 0.000 0.889 0.000
0.889 0.000 0.111 0.000
0.000 0.000 1.000 0.000
0.111 0.222 0.667 0.000
0.778 0.111 0.000 0.111