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Details for NP_440871.1_2

Name NP_440871.1_2
Length 20
Regular expression CA[AG]C[ACG][GAC][ACT][GT][GC]GGG[CA][TA][GA]CAGCA
Central No

Motif logo

Genes containing this motif

25 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
sll1060 Forward -381 -362 13.1758 0.267
ssl2069 Forward -194 -175 13.1758 0.267
ssr1853 Reverse -75 -94 13.1758 0.267
slr0721 Forward -292 -273 14.8474 0.241
slr0245 Forward -321 -302 11.7992 0.289
slr0250 Forward -130 -111 12.6841 0.267
sll1323 Reverse -311 -330 14.9458 0.241
slr1887 Forward -307 -288 12.8808 0.267
slr1811 Forward -270 -251 17.8957 0.241
slr1737 Reverse -92 -111 17.404 0.241
sll1956 Reverse -189 -208 14.7491 0.241
sll1608 Reverse -118 -137 14.7491 0.241
ssl2781 Forward -299 -280 15.9291 0.241
sll1220 Reverse -12 -31 13.2741 0.267
slr1282 Reverse -302 -321 12.4875 0.267
sll0359 Forward -382 -363 12.4875 0.267
sll0415 Forward -77 -58 12.6841 0.267
slr0434 Forward -92 -73 20.7473 0.182
sll0541 Reverse -225 -244 12.0942 0.289
slr0799 Reverse -274 -293 14.8474 0.241
sll5047 Reverse -294 -313 15.8307 0.241
sll5094 Reverse -116 -135 14.0608 0.267
ssl7039 Reverse -132 -151 11.7992 0.289
slr7041 Forward -228 -209 11.7992 0.289
slr6043 Reverse -322 -341 12.4875 0.267
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.000  1.000  0.000  0.000  
1.000 0.000 0.000 0.000
0.500 0.000 0.500 0.000
0.100 0.900 0.000 0.000
0.600 0.200 0.200 0.000
0.300 0.300 0.400 0.000
0.500 0.200 0.100 0.200
0.100 0.100 0.400 0.400
0.100 0.200 0.600 0.100
0.000 0.000 1.000 0.000
0.000 0.100 0.900 0.000
0.100 0.100 0.700 0.100
0.300 0.500 0.100 0.100
0.400 0.000 0.000 0.600
0.300 0.000 0.700 0.000
0.000 0.900 0.100 0.000
1.000 0.000 0.000 0.000
0.000 0.000 1.000 0.000
0.000 0.900 0.100 0.000
0.800 0.100 0.000 0.100