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Details for NP_440834.1_2

Name NP_440834.1_2
Length 20
Regular expression [CA]C[CT][CAT]GGT[GT]T[TG]C[AC][TC]CTGG[CG][GCT]C
Central No

Motif logo

Genes containing this motif

35 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
sll1406 Forward -112 -93 14.6499 0.275
sll1405 Forward -171 -152 11.6017 0.275
slr0728 Forward -258 -239 15.8299 0.275
sll0931 Reverse -258 -277 12.4867 0.275
slr0981 Reverse -36 -55 11.995 0.275
sll1752 Forward -364 -345 11.405 0.275
ssr3122 Reverse -316 -335 11.7983 0.275
slr1846 Reverse -344 -363 11.405 0.275
slr1385 Forward -204 -185 21.828 0.0492
slr1393 Reverse -299 -318 12.88 0.275
slr1394 Forward -102 -83 13.0766 0.275
slr1699 Reverse -180 -199 11.3067 0.275
slr1546 Forward -177 -158 14.4533 0.275
slr1229 Forward -249 -230 22.9097 0.0492
slr0813 Forward -187 -168 10.9134 0.296
slr0143 Forward -188 -169 11.405 0.275
sll1865 Reverse -184 -203 12.6833 0.275
slr0377 Reverse -220 -239 12.1917 0.275
sll0198 Forward -377 -358 14.7483 0.275
slr0232 Forward -255 -236 11.7 0.275
sll0614 Reverse -71 -90 14.1583 0.275
slr0917 Reverse -365 -384 16.8132 0.223
sll0477 Reverse -287 -306 11.995 0.275
sll0092 Forward -298 -279 19.5664 0.109
slr1431 Forward -306 -287 12.585 0.275
sll1477 Reverse -251 -270 13.8633 0.275
slr1583 Forward -387 -368 13.8633 0.275
sll0722 Forward -286 -267 11.5033 0.275
sll5132 Reverse -182 -201 13.6666 0.275
slr5078 Reverse -263 -282 12.29 0.275
ssl7039 Reverse -250 -269 11.2084 0.275
slr7041 Forward -110 -91 11.2084 0.275
slr6009 Reverse -330 -349 11.7 0.275
slr6068 Reverse -330 -349 11.7 0.275
sllt43 Reverse -254 -273 16.8132 0.223
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.250  0.625  0.000  0.125  
0.125 0.875 0.000 0.000
0.125 0.625 0.000 0.250
0.250 0.375 0.125 0.250
0.000 0.000 0.875 0.125
0.000 0.000 0.875 0.125
0.000 0.000 0.125 0.875
0.000 0.000 0.625 0.375
0.000 0.000 0.125 0.875
0.000 0.000 0.250 0.750
0.000 0.875 0.000 0.125
0.750 0.250 0.000 0.000
0.000 0.250 0.000 0.750
0.000 1.000 0.000 0.000
0.000 0.000 0.125 0.875
0.000 0.125 0.875 0.000
0.125 0.125 0.750 0.000
0.000 0.750 0.250 0.000
0.000 0.250 0.500 0.250
0.125 0.875 0.000 0.000