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Details for NP_440766.1_10

Name NP_440766.1_10
Length 20
Regular expression CT[GA][CA]AG[TC]GG[CA][TG]T[CT]T[AG]T[TA]AA[TA]
Central No

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Genes containing this motif

2 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
sll0284 Forward -345 -326 18.7807 0.238
6803t22 Reverse -95 -114 16.7157 0.24
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

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PSPM

0.000  1.000  0.000  0.000  
0.000 0.167 0.000 0.833
0.333 0.000 0.667 0.000
0.333 0.500 0.000 0.167
0.667 0.167 0.000 0.167
0.000 0.000 1.000 0.000
0.000 0.333 0.000 0.667
0.000 0.000 1.000 0.000
0.000 0.000 1.000 0.000
0.333 0.500 0.000 0.167
0.000 0.167 0.333 0.500
0.167 0.000 0.000 0.833
0.000 0.667 0.000 0.333
0.000 0.000 0.000 1.000
0.667 0.000 0.333 0.000
0.000 0.000 0.000 1.000
0.333 0.167 0.000 0.500
0.667 0.167 0.000 0.167
1.000 0.000 0.000 0.000
0.333 0.000 0.000 0.667