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Details for NP_440757.1_4

Name NP_440757.1_4
Length 20
Regular expression G[GA]AGG[GA]G[TG][GA]G[CG]CC[TA]C[CA][AC]CCT
Central No

Motif logo

Genes containing this motif

24 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
sll0932 Reverse -111 -130 3.93269 0.254
sll0993 Reverse -57 -76 6.39097 0.171
slr1022 Forward -67 -48 6.39097 0.171
sll1283 Forward -315 -296 19.174 0.0185
sll1283 Reverse -294 -313 0.982764 0.295
sll1801 Forward -218 -199 1.27776 0.288
sll1632 Forward -372 -353 6.88262 0.171
slr1879 Forward -286 -267 21.9273 0.0113
sll1695 Reverse -237 -256 3.04771 0.264
slr0270 Reverse -193 -212 1.57275 0.288
slr0328 Forward -242 -223 10.1275 0.0987
sll0586 Forward -380 -361 1.86774 0.288
sll0505 Reverse -235 -254 2.0644 0.284
sll1334 Forward -85 -66 3.34271 0.254
slr1429 Reverse -227 -246 3.34271 0.254
slr1451 Forward -159 -140 4.22769 0.254
slr1556 Reverse -271 -290 3.44104 0.254
ssl6018 Reverse -300 -319 11.0125 0.0836
ssl6018 Forward -321 -302 2.0644 0.284
ssr6020 Forward -123 -104 11.0125 0.0836
ssr6020 Reverse -102 -121 2.0644 0.284
ssl6023 Forward -127 -108 1.17943 0.288
ssr6024 Reverse -26 -45 1.17943 0.288
ssl6077 Reverse -300 -319 11.0125 0.0836
ssl6077 Forward -321 -302 2.0644 0.284
ssr6079 Forward -123 -104 11.0125 0.0836
ssr6079 Reverse -102 -121 2.0644 0.284
ssl6082 Forward -127 -108 1.17943 0.288
ssr6083 Reverse -26 -45 1.17943 0.288
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.000  0.000  1.000  0.000  
0.250 0.000 0.750 0.000
1.000 0.000 0.000 0.000
0.000 0.000 1.000 0.000
0.000 0.000 1.000 0.000
0.375 0.000 0.625 0.000
0.000 0.000 1.000 0.000
0.000 0.000 0.250 0.750
0.250 0.000 0.625 0.125
0.000 0.000 1.000 0.000
0.000 0.750 0.250 0.000
0.000 1.000 0.000 0.000
0.000 0.875 0.000 0.125
0.375 0.000 0.000 0.625
0.000 1.000 0.000 0.000
0.250 0.625 0.000 0.125
0.625 0.250 0.000 0.125
0.000 1.000 0.000 0.000
0.000 1.000 0.000 0.000
0.000 0.000 0.000 1.000