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Details for NP_440738.1_5

Name NP_440738.1_5
Length 20
Regular expression AT[TC]GCC[CAG]A[AG]AC[CT]AA[AG][CA]TGCC
Central No

Motif logo

Genes containing this motif

115 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
slr0727 Forward -395 -376 0.58944 0.297
slr0245 Forward -155 -136 6.39097 0.246
sll1325 Forward -376 -357 1.0811 0.297
sll1040 Forward -191 -172 0.58944 0.297
slr1093 Reverse -39 -58 0.58944 0.297
sll1678 Reverse -187 -206 4.12936 0.26
sll1659 Forward -222 -203 4.71934 0.246
slr0975 Reverse -83 -102 3.44104 0.269
slr1078 Reverse -298 -317 8.35759 0.226
slr1590 Reverse -97 -116 10.4225 0.124
sll1516 Reverse -20 -39 -0.000545616 0.297
slr1596 Forward -369 -350 -0.000545616 0.297
smr0007 Reverse -38 -57 0.294447 0.297
smr0008 Reverse -190 -209 0.294447 0.297
slr1031 Forward -331 -312 0.687771 0.297
slr1140 Forward -126 -107 7.17762 0.246
sll1071 Reverse -196 -215 5.01433 0.246
sll1823 Reverse -194 -213 3.14605 0.27
sll1807 Forward -186 -167 3.83436 0.26
sll1123 Forward -372 -353 6.29264 0.246
slr1194 Forward -367 -348 10.4225 0.124
slr1207 Forward -379 -360 0.196116 0.297
sll1968 Forward -139 -120 5.80098 0.246
sll1744 Forward -191 -172 28.2204 0.0015
slr1839 Reverse -334 -353 10.8159 0.124
slr1540 Forward -104 -85 0.0977854 0.297
slr1241 Reverse -263 -282 2.55606 0.285
sll1355 Forward -85 -66 2.75272 0.28
slr0883 Reverse -358 -377 3.6377 0.26
sll0865 Forward -60 -41 3.6377 0.26
slr0891 Reverse -295 -314 6.88262 0.246
slr0891 Reverse -60 -79 3.6377 0.26
slr0891 Reverse -223 -242 2.65439 0.282
slr1407 Forward -325 -306 5.30933 0.246
ssl3379 Reverse -201 -220 1.27776 0.293
sll1764 Forward -299 -280 4.916 0.246
sll1763 Reverse -290 -309 0.392778 0.297
ssl3829 Forward -74 -55 2.26107 0.289
slr2141 Reverse -364 -383 2.26107 0.289
slr1818 Forward -291 -272 0.294447 0.297
sll1618 Reverse -307 -326 5.30933 0.246
ssl3692 Forward -319 -300 0.0977854 0.297
slr1998 Reverse -310 -329 7.47261 0.246
ssl3127 Reverse -60 -79 4.12936 0.26
ssl3127 Reverse -74 -93 1.76941 0.289
slr2089 Forward -275 -256 16.3224 0.0524
sll1981 Forward -331 -312 4.71934 0.246
sll1868 Reverse -373 -392 0.982764 0.297
slr1152 Reverse -327 -346 5.11266 0.246
slr1161 Reverse -42 -61 3.34271 0.27
slr0940 Reverse -291 -310 3.83436 0.26
slr0447 Forward -119 -100 0.392778 0.297
sll0267 Reverse -18 -37 2.94938 0.275
sll0264 Forward -176 -157 1.96607 0.289
sll0359 Forward -152 -133 1.57275 0.289
slr0397 Reverse -182 -201 1.57275 0.289
ssr0657 Reverse -198 -217 1.76941 0.289
sll0144 Forward -233 -214 0.294447 0.297
slr1925 Reverse -222 -241 0.982764 0.297
slr1935 Reverse -127 -146 2.94938 0.275
sll1841 Reverse -132 -151 11.8975 0.111
slr1949 Forward -79 -60 11.8975 0.111
slr0990 Forward -280 -261 7.47261 0.246
ssl1807 Reverse -330 -349 0.491109 0.297
slr0326 Forward -359 -340 1.47442 0.289
ssr0536 Reverse -219 -238 3.14605 0.27
sll0293 Forward -327 -308 5.89931 0.246
slr0171 Reverse -84 -103 0.982764 0.297
slr0172 Forward -256 -237 0.196116 0.297
sll0157 Forward -102 -83 2.45773 0.287
sll0756 Forward -71 -52 17.699 0.0524
sll0321 Forward -263 -244 0.58944 0.297
slr0354 Forward -384 -365 1.27776 0.293
sll0005 Reverse -98 -117 5.30933 0.246
slr0020 Forward -90 -71 5.30933 0.246
sll0412 Forward -48 -29 7.27595 0.246
sll0680 Forward -124 -105 5.11266 0.246
sll0613 Forward -257 -238 16.6174 0.0524
sll0398 Reverse -242 -261 4.03102 0.26
sll0396 Reverse -112 -131 13.7658 0.105
sll0385 Reverse -108 -127 11.8975 0.111
sll0178 Forward -291 -272 -0.000545616 0.297
slr0918 Reverse -270 -289 1.67108 0.289
sll0891 Reverse -216 -235 6.19431 0.246
sll0544 Reverse -198 -217 4.916 0.246
slr0572 Forward -216 -197 4.916 0.246
slr0582 Reverse -223 -242 6.98095 0.246
slr0842 Forward -315 -296 0.0977854 0.297
slr0091 Reverse -157 -176 1.27776 0.293
sll0488 Forward -20 -1 6.09597 0.246
slr0505 Forward -260 -241 1.47442 0.289
slr0119 Reverse -109 -128 1.76941 0.289
sll0676 Forward -54 -35 -0.000545616 0.297
sll0671 Reverse -65 -84 1.47442 0.289
slr0927 Reverse -308 -327 0.687771 0.297
sll0896 Reverse -43 -62 2.16274 0.289
slr1461 Reverse -331 -350 7.96426 0.241
sll1365 Forward -284 -265 1.47442 0.289
slr0656 Reverse -88 -107 -0.000545616 0.297
sll1483 Reverse -66 -85 5.30933 0.246
sll1477 Reverse -282 -301 1.76941 0.289
slr1583 Forward -356 -337 1.76941 0.289
sll1470 Forward -23 -4 0.58944 0.297
slr1588 Reverse -206 -225 0.58944 0.297
ssr1258 Forward -44 -25 13.1758 0.108
sll0449 Reverse -270 -289 16.6174 0.0524
sll0444 Reverse -70 -89 3.83436 0.26
sll0441 Forward -221 -202 1.86774 0.289
sll0430 Forward -346 -327 4.32602 0.26
slr0587 Reverse -200 -219 2.85105 0.277
sll5032 Forward -251 -232 3.6377 0.26
slr7037 Reverse -102 -121 3.14605 0.27
sll7050 Forward -115 -96 -0.000545616 0.297
slr7052 Reverse -236 -255 -0.000545616 0.297
sll7064 Forward -215 -196 4.71934 0.246
sll7070 Reverse -191 -210 2.0644 0.289
6803t20 Reverse -103 -122 10.9142 0.124
6803t27 Reverse -58 -77 0.491109 0.297
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

1.000  0.000  0.000  0.000  
0.000 0.000 0.000 1.000
0.045 0.364 0.000 0.591
0.000 0.000 1.000 0.000
0.000 1.000 0.000 0.000
0.045 0.773 0.000 0.182
0.273 0.500 0.227 0.000
1.000 0.000 0.000 0.000
0.545 0.045 0.409 0.000
0.909 0.091 0.000 0.000
0.136 0.864 0.000 0.000
0.091 0.500 0.182 0.227
1.000 0.000 0.000 0.000
1.000 0.000 0.000 0.000
0.682 0.000 0.318 0.000
0.409 0.500 0.000 0.091
0.000 0.000 0.000 1.000
0.000 0.091 0.773 0.136
0.000 1.000 0.000 0.000
0.000 1.000 0.000 0.000