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Details for NP_440708.1_5

Name NP_440708.1_5
Length 20
Regular expression CC[AGT]GCGAT[AG]TC[CGT]AC[GA]AACTC
Central Yes

Motif logo

Genes containing this motif

17 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
sll1192 Reverse -155 -174 7.57094 0.178
slr2048 Reverse -95 -114 5.01433 0.282
slr1207 Forward -297 -278 24.1889 0.00424
slr0444 Reverse -318 -337 10.9142 0.08
sll1845 Forward -61 -42 4.22769 0.289
slr1942 Reverse -61 -80 4.22769 0.289
sll0293 Forward -392 -373 11.8975 0.0653
slr1428 Reverse -262 -281 6.09597 0.234
ssl5007 Reverse -255 -274 3.14605 0.292
ssr5009 Forward -260 -241 3.14605 0.292
slr5051 Reverse -354 -373 18.879 0.0205
ssl5091 Reverse -255 -274 3.14605 0.292
ssr5092 Forward -117 -98 3.14605 0.292
sll6060 Forward -301 -282 12.6841 0.0574
ssl6061 Forward -61 -42 12.6841 0.0574
ssr6062 Reverse -255 -274 12.6841 0.0574
slr6096 Reverse -231 -250 8.16093 0.169
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.000  1.000  0.000  0.000  
0.000 0.889 0.000 0.111
0.444 0.000 0.333 0.222
0.000 0.000 1.000 0.000
0.000 1.000 0.000 0.000
0.111 0.000 0.778 0.111
1.000 0.000 0.000 0.000
0.000 0.000 0.000 1.000
0.778 0.000 0.222 0.000
0.000 0.000 0.000 1.000
0.000 1.000 0.000 0.000
0.111 0.333 0.333 0.222
1.000 0.000 0.000 0.000
0.000 1.000 0.000 0.000
0.444 0.000 0.556 0.000
1.000 0.000 0.000 0.000
1.000 0.000 0.000 0.000
0.000 0.889 0.000 0.111
0.000 0.111 0.000 0.889
0.000 0.889 0.111 0.000