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Details for NP_440676.1_4

Name NP_440676.1_4
Length 20
Regular expression A[AC][AG]T[CT][AG][TC]C[GC][GT]AACTG[CA][CT]ACC
Central No

Motif logo

Genes containing this motif

4 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
slr1385 Forward -175 -156 17.6982 0.267
slr1740 Forward -111 -92 18.6815 0.267
sll1615 Reverse -347 -366 17.1082 0.267
sll0100 Forward -191 -172 19.3698 0.267
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

1.000  0.000  0.000  0.000  
0.727 0.273 0.000 0.000
0.455 0.091 0.455 0.000
0.000 0.000 0.000 1.000
0.000 0.727 0.000 0.273
0.545 0.000 0.273 0.182
0.091 0.273 0.182 0.455
0.000 1.000 0.000 0.000
0.182 0.364 0.455 0.000
0.000 0.091 0.636 0.273
1.000 0.000 0.000 0.000
0.636 0.182 0.182 0.000
0.000 0.909 0.000 0.091
0.000 0.000 0.000 1.000
0.091 0.091 0.818 0.000
0.273 0.727 0.000 0.000
0.182 0.545 0.000 0.273
0.636 0.182 0.182 0.000
0.182 0.818 0.000 0.000
0.091 0.818 0.091 0.000