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Details for NP_440675.1_3

Name NP_440675.1_3
Length 20
Regular expression [CG][CGT][TC]GATC[AG]C[GT][GC][GAC][CTG][CT]TG[CT]TGG
Central No

Motif logo

Genes containing this motif

123 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
slr0611 Reverse -251 -270 5.211 0.287
slr1317 Forward -160 -141 4.52268 0.3
sll1394 Reverse -236 -255 9.53756 0.186
slr1115 Forward -351 -332 5.01433 0.296
sll1057 Forward -73 -54 10.1275 0.186
slr0723 Forward -48 -29 10.9142 0.186
slr0741 Forward -128 -109 6.19431 0.277
slr0243 Reverse -205 -224 7.17762 0.25
sll0216 Reverse -143 -162 4.62101 0.3
slr1417 Forward -237 -218 5.60432 0.277
slr1099 Forward -209 -190 12.8808 0.17
ssl2009 Reverse -123 -142 9.93088 0.186
sll1035 Reverse -282 -301 13.9625 0.161
sll1686 Forward -376 -357 5.40766 0.285
ssr2972 Reverse -189 -208 5.40766 0.285
sll1677 Reverse -128 -147 4.916 0.297
sll1024 Forward -74 -55 9.3409 0.186
sll1022 Forward -318 -299 13.2741 0.161
sll0638 Forward -273 -254 5.99764 0.277
slr1046 Reverse -88 -107 6.4893 0.267
ssr1736 Forward -262 -243 9.14423 0.194
sll0994 Reverse -365 -384 5.01433 0.296
slr1395 Forward -51 -32 6.58763 0.266
ssr3409 Forward -261 -242 12.5858 0.17
sll1917 Reverse -107 -126 5.60432 0.277
ssl3432 Forward -182 -163 5.80098 0.277
slr1197 Reverse -310 -329 6.98095 0.257
slr1827 Forward -303 -284 7.47261 0.25
sll1724 Reverse -74 -93 5.89931 0.277
slr1218 Reverse -204 -223 5.60432 0.277
slr1240 Reverse -177 -196 7.86593 0.233
ssl3379 Forward -340 -321 6.68596 0.261
ssr3188 Reverse -258 -277 13.4708 0.161
slr2144 Forward -360 -341 8.65258 0.201
slr1742 Reverse -308 -327 6.09597 0.277
slr1744 Forward -252 -233 9.3409 0.186
sll1165 Reverse -203 -222 4.62101 0.3
sll1150 Reverse -210 -229 11.8975 0.17
sll1150 Reverse -348 -367 7.17762 0.25
slr1255 Reverse -352 -371 6.78429 0.261
slr1724 Forward -219 -200 5.30933 0.287
ssl3127 Forward -100 -81 10.6192 0.186
sll1987 Forward -163 -144 5.70265 0.277
slr2087 Reverse -41 -60 5.70265 0.277
slr1512 Reverse -266 -285 8.94757 0.198
ssr2551 Forward -248 -229 19.2723 0.0975
sll1231 Reverse -195 -214 10.2259 0.186
sll0817 Forward -199 -180 6.4893 0.267
sll0804 Forward -287 -268 6.68596 0.261
sll1262 Forward -348 -329 7.17762 0.25
sll1250 Forward -177 -158 8.45592 0.204
sll1894 Reverse -337 -356 12.0942 0.17
sll1876 Reverse -360 -379 5.70265 0.277
slr1278 Forward -328 -309 17.2074 0.0975
slr1171 Forward -245 -226 4.916 0.297
slr1678 Forward -344 -325 6.88262 0.261
sll1562 Reverse -359 -378 5.80098 0.277
slr0937 Reverse -175 -194 11.8975 0.17
slr0954 Forward -370 -351 4.52268 0.3
sll1534 Forward -301 -282 5.11266 0.293
sll0270 Forward -367 -348 7.17762 0.25
sll0263 Reverse -89 -108 8.75091 0.201
slr0288 Forward -317 -298 7.37428 0.25
slr0163 Forward -77 -58 5.80098 0.277
slr0329 Reverse -202 -221 5.60432 0.277
sll0293 Forward -280 -261 7.07928 0.253
slr0377 Forward -332 -313 13.4708 0.161
sll0328 Forward -248 -229 4.71934 0.3
sll0328 Forward -62 -43 4.71934 0.3
slr0773 Reverse -315 -334 4.52268 0.3
sll0762 Forward -340 -321 5.50599 0.282
sll0759 Reverse -304 -323 5.30933 0.287
sll0754 Forward -137 -118 8.75091 0.201
slr0341 Forward -267 -248 14.6508 0.161
slr0350 Forward -201 -182 5.80098 0.277
sll0023 Forward -317 -298 4.916 0.297
sll0012 Forward -291 -272 4.52268 0.3
sll0462 Forward -48 -29 5.89931 0.277
slr0476 Reverse -251 -270 7.37428 0.25
sll0454 Forward -389 -370 8.65258 0.201
sll0687 Forward -134 -115 11.6025 0.178
sll0377 Forward -259 -240 5.70265 0.277
slr0211 Reverse -59 -78 11.5042 0.178
slr0845 Reverse -354 -373 18.584 0.0975
slr0079 Reverse -343 -362 9.73422 0.186
sll0584 Forward -72 -53 8.35759 0.204
slr0624 Reverse -98 -117 8.35759 0.204
sll0092 Forward -336 -317 14.7491 0.161
sll0676 Reverse -222 -241 9.83255 0.186
ssr1175 Forward -240 -221 9.83255 0.186
sll0662 Reverse -221 -240 9.0459 0.196
sll0042 Forward -181 -162 6.68596 0.261
slr0527 Reverse -286 -305 10.6192 0.186
sll0493 Forward -56 -37 9.3409 0.186
slr1428 Reverse -338 -357 5.89931 0.277
sll1367 Reverse -261 -280 11.9958 0.17
sll0626 Forward -221 -202 11.0125 0.186
ssr1114 Forward -339 -320 9.83255 0.186
slr0664 Forward -106 -87 6.09597 0.277
sll0729 Reverse -239 -258 10.2259 0.186
slr0455 Reverse -318 -337 6.09597 0.277
slr0457 Reverse -324 -343 8.55425 0.203
slr0588 Reverse -354 -373 9.83255 0.186
slr0605 Reverse -307 -326 12.0942 0.17
slr5010 Forward -302 -283 7.57094 0.25
sll5028 Forward -208 -189 17.5024 0.0975
slr5029 Reverse -201 -220 17.5024 0.0975
slr5073 Forward -247 -228 10.3242 0.186
ssl5091 Forward -370 -351 13.3725 0.161
ssr5092 Reverse -2 -21 13.3725 0.161
slr5093 Reverse -345 -364 13.3725 0.161
ssl5103 Forward -138 -119 5.211 0.287
slr5111 Forward -301 -282 12.3892 0.17
sll7070 Reverse -281 -300 10.5209 0.186
sll8018 Forward -368 -349 7.17762 0.25
slr8030 Forward -73 -54 4.52268 0.3
sll8033 Reverse -371 -390 10.1275 0.186
slr6110 Reverse -376 -395 4.52268 0.3
slr6029 Forward -151 -132 4.81767 0.3
ssr6032 Forward -182 -163 9.3409 0.186
slr6033 Forward -201 -182 9.3409 0.186
slr6038 Forward -138 -119 5.211 0.287
slr6088 Forward -151 -132 4.81767 0.3
slr6091 Forward -201 -182 9.3409 0.186
sll6109 Forward -306 -287 4.52268 0.3
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.000  0.778  0.222  0.000  
0.000 0.556 0.222 0.222
0.000 0.222 0.000 0.778
0.000 0.000 1.000 0.000
0.889 0.111 0.000 0.000
0.000 0.000 0.000 1.000
0.000 0.889 0.111 0.000
0.778 0.000 0.222 0.000
0.000 0.889 0.000 0.111
0.000 0.111 0.444 0.444
0.000 0.333 0.667 0.000
0.222 0.222 0.556 0.000
0.111 0.333 0.222 0.333
0.000 0.778 0.000 0.222
0.000 0.000 0.000 1.000
0.000 0.000 0.889 0.111
0.111 0.444 0.111 0.333
0.000 0.000 0.000 1.000
0.000 0.111 0.889 0.000
0.111 0.000 0.889 0.000