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Details for NP_440634.1_4

Name NP_440634.1_4
Length 20
Regular expression [GC][GA]GC[CA][AG][CT][TA]G[AG][CT]CA[GT]GGCGC[AT]
Central No

Motif logo

Genes containing this motif

38 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
slr0724 Reverse -98 -117 8.25926 0.257
sll1672 Forward -367 -348 16.8141 0.182
ssr2142 Reverse -91 -110 8.94757 0.257
sll0931 Reverse -233 -252 8.65258 0.257
sll0641 Reverse -127 -146 9.93088 0.257
slr2016 Reverse -377 -396 7.17762 0.257
sll1740 Forward -99 -80 7.37428 0.257
slr1826 Reverse -6 -25 7.37428 0.257
sll1129 Forward -303 -284 8.84924 0.257
ssr2061 Reverse -102 -121 8.84924 0.257
sll1960 Forward -319 -300 8.65258 0.257
sll1987 Reverse -149 -168 9.63589 0.257
slr2087 Forward -55 -36 9.63589 0.257
sll1886 Forward -303 -284 6.39097 0.293
ssl2148 Forward -339 -320 6.39097 0.293
sll1087 Reverse -242 -261 13.8641 0.257
slr1675 Reverse -235 -254 8.25926 0.257
sll0913 Forward -61 -42 7.17762 0.257
sll1854 Reverse -89 -108 9.0459 0.257
sll0762 Reverse -326 -345 8.16093 0.257
sll0018 Reverse -255 -274 7.57094 0.257
sll0199 Reverse -146 -165 6.39097 0.293
slr0226 Forward -280 -261 6.39097 0.293
slr0896 Reverse -71 -90 10.6192 0.257
slr0072 Forward -379 -360 8.25926 0.257
sll0597 Reverse -15 -34 8.25926 0.257
ssl1255 Reverse -362 -381 16.7157 0.182
slr0041 Reverse -306 -325 10.7175 0.257
slr0545 Reverse -171 -190 9.43923 0.257
slr0661 Reverse -124 -143 10.7175 0.257
ssr2781 Reverse -168 -187 7.66927 0.257
slr1188 Forward -293 -274 7.86593 0.257
sll0574 Forward -252 -233 9.3409 0.257
ssl5007 Forward -136 -117 7.57094 0.257
ssr5009 Reverse -379 -398 7.57094 0.257
ssl5091 Forward -136 -117 7.57094 0.257
ssr5092 Reverse -236 -255 7.57094 0.257
slr7099 Forward -255 -236 7.47261 0.257
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.000  0.250  0.750  0.000  
0.250 0.000 0.750 0.000
0.000 0.000 1.000 0.000
0.000 1.000 0.000 0.000
0.250 0.750 0.000 0.000
0.625 0.000 0.250 0.125
0.000 0.625 0.125 0.250
0.250 0.125 0.000 0.625
0.125 0.000 0.875 0.000
0.750 0.000 0.250 0.000
0.000 0.625 0.000 0.375
0.125 0.750 0.125 0.000
1.000 0.000 0.000 0.000
0.000 0.000 0.750 0.250
0.000 0.125 0.875 0.000
0.000 0.000 1.000 0.000
0.000 1.000 0.000 0.000
0.000 0.000 0.875 0.125
0.000 0.875 0.125 0.000
0.625 0.000 0.000 0.375