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Details for NP_440588.1_3

Name NP_440588.1_3
Length 20
Regular expression [TG][GT][GA][AC][CA][AG][GT][TAC]G[CGT][TCG][CG]A[AT][GA][AC][TG]GGC
Central Yes

Motif logo

Genes containing this motif

98 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
slr1494 Reverse -67 -86 8.84924 0.293
sll1398 Forward -360 -341 18.3873 0.128
slr1113 Forward -81 -62 22.3206 0.0394
slr0731 Reverse -12 -31 10.2259 0.253
sll0699 Forward -345 -326 20.4523 0.093
sll1683 Forward -122 -103 10.9142 0.253
sll1654 Reverse -161 -180 11.6025 0.248
sll1191 Forward -114 -95 8.55425 0.296
ssr2153 Reverse -120 -139 8.55425 0.296
sll1186 Reverse -21 -40 8.94757 0.291
sll0924 Forward -200 -181 10.4225 0.253
slr1090 Reverse -259 -278 9.83255 0.263
sll1509 Reverse -277 -296 12.4875 0.248
slr1599 Forward -89 -70 12.4875 0.248
sll1503 Forward -255 -236 11.3075 0.248
sll1750 Reverse -258 -277 12.4875 0.248
smr0006 Reverse -240 -259 10.0292 0.253
slr2041 Forward -159 -140 12.2908 0.248
slr2045 Reverse -159 -178 13.5691 0.237
sll0980 Reverse -129 -148 9.24257 0.291
slr1376 Reverse -31 -50 11.8975 0.248
slr1391 Reverse -173 -192 13.4708 0.237
sll1283 Forward -76 -57 8.65258 0.296
slr1699 Reverse -72 -91 8.65258 0.296
slr1150 Forward -190 -171 22.4189 0.0394
sll1818 Forward -344 -325 11.8975 0.248
slr1903 Forward -277 -258 11.6025 0.248
slr2074 Forward -127 -108 8.94757 0.291
sll1965 Reverse -259 -278 12.4875 0.248
slr2076 Forward -272 -253 12.4875 0.248
sll1735 Reverse -192 -211 10.5209 0.253
slr1225 Reverse -204 -223 9.73422 0.268
sll1267 Forward -52 -33 10.8159 0.253
sll1761 Reverse -332 -351 11.7992 0.248
sll1760 Reverse -55 -74 10.6192 0.253
slr1880 Forward -205 -186 10.6192 0.253
sll1708 Reverse -314 -333 10.1275 0.253
slr1808 Reverse -378 -397 15.2408 0.219
sll1699 Forward -25 -6 12.0942 0.248
slr1732 Forward -257 -238 10.5209 0.253
sll1157 Forward -277 -258 10.5209 0.253
slr1250 Forward -227 -208 11.3075 0.248
slr1251 Forward -76 -57 13.3725 0.237
sll1615 Forward -128 -109 10.8159 0.253
slr1721 Forward -375 -356 14.0608 0.237
sll1595 Forward -172 -153 11.3075 0.248
slr1726 Reverse -251 -270 11.3075 0.248
slr0269 Reverse -228 -247 13.0775 0.248
slr2081 Reverse -279 -298 12.5858 0.248
sll1987 Forward -196 -177 10.3242 0.253
slr2087 Reverse -8 -27 10.3242 0.253
sll1980 Forward -190 -171 9.0459 0.291
slr2096 Forward -277 -258 10.5209 0.253
slr2101 Reverse -259 -278 10.0292 0.253
ssr2549 Forward -315 -296 8.84924 0.293
ssr2194 Forward -316 -297 23.0089 0.0394
slr1470 Reverse -123 -142 8.75091 0.296
sll1370 Reverse -208 -227 13.6675 0.237
sll1370 Forward -229 -210 8.65258 0.296
ssr2130 Forward -323 -304 17.994 0.128
slr1677 Reverse -170 -189 9.43923 0.291
slr1622 Forward -75 -56 12.1925 0.248
sll1537 Forward -373 -354 11.3075 0.248
slr1627 Reverse -105 -124 11.3075 0.248
slr0445 Forward -342 -323 11.8975 0.248
slr0401 Forward -385 -366 14.9458 0.221
sll0136 Forward -397 -378 13.9625 0.237
sll0293 Forward -96 -77 10.3242 0.253
slr0338 Reverse -133 -152 10.3242 0.253
slr0770 Forward -174 -155 11.7008 0.248
slr0233 Reverse -276 -295 10.3242 0.253
slr0435 Forward -280 -261 14.7491 0.221
slr0435 Reverse -199 -218 10.9142 0.253
slr0438 Forward -176 -157 13.7658 0.237
ssl0769 Forward -393 -374 14.2574 0.237
slr0209 Reverse -33 -52 8.94757 0.291
sll0545 Forward -281 -262 8.94757 0.291
slr0510 Reverse -197 -216 17.0107 0.155
sll0588 Forward -196 -177 8.94757 0.291
sll0289 Reverse -339 -358 10.6192 0.253
slr0698 Reverse -194 -213 12.2908 0.248
slr0712 Reverse -20 -39 10.2259 0.253
sll0745 Reverse -314 -333 10.9142 0.253
slr0036 Forward -178 -159 12.7825 0.248
slr0036 Forward -100 -81 10.1275 0.253
slr0531 Forward -172 -153 10.1275 0.253
sll0902 Forward -21 -2 9.83255 0.263
sll0534 Reverse -190 -209 9.24257 0.291
sll1367 Forward -302 -283 11.0125 0.253
sll1367 Reverse -214 -233 8.55425 0.296
slr1454 Forward -198 -179 18.879 0.128
sll1363 Forward -50 -31 15.4374 0.219
slr0655 Reverse -100 -119 11.7008 0.248
sll0623 Forward -108 -89 11.1109 0.253
sll1482 Reverse -94 -113 9.0459 0.291
slr0455 Reverse -281 -300 18.584 0.128
sll0569 Forward -269 -250 10.0292 0.253
slr5037 Reverse -103 -122 12.0942 0.248
ssl7038 Reverse -334 -353 9.0459 0.291
ssl7039 Reverse -33 -52 9.0459 0.291
ssr7040 Forward -85 -66 9.0459 0.291
slr7041 Forward -327 -308 9.0459 0.291
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.000  0.000  0.300  0.700  
0.000 0.000 0.700 0.300
0.400 0.000 0.600 0.000
0.500 0.500 0.000 0.000
0.400 0.600 0.000 0.000
0.500 0.000 0.500 0.000
0.000 0.000 0.500 0.500
0.200 0.200 0.100 0.500
0.000 0.000 0.900 0.100
0.000 0.600 0.200 0.200
0.000 0.300 0.200 0.500
0.100 0.400 0.400 0.100
1.000 0.000 0.000 0.000
0.700 0.100 0.000 0.200
0.400 0.000 0.500 0.100
0.500 0.500 0.000 0.000
0.000 0.000 0.300 0.700
0.000 0.000 1.000 0.000
0.000 0.000 1.000 0.000
0.000 1.000 0.000 0.000