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Details for NP_440571.1_5

Name NP_440571.1_5
Length 20
Regular expression A[CGA][CA]AATT[TAC][GTA][CTA][CG]GA[TC][TG]A[AT]T[AC][AC]
Central No

Motif logo

Genes containing this motif

16 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
sll1401 Forward -33 -14 14.9458 0.221
sll0709 Reverse -315 -334 21.2389 0.198
slr1614 Reverse -379 -398 17.699 0.221
slr1600 Reverse -18 -37 13.9625 0.221
slr1902 Forward -111 -92 13.6675 0.236
slr2071 Reverse -120 -139 14.4541 0.221
slr1854 Reverse -334 -353 15.5357 0.221
slr1262 Forward -22 -3 15.9291 0.221
sll0459 Reverse -153 -172 13.2741 0.248
slr0476 Forward -39 -20 13.2741 0.248
sll0477 Reverse -10 -29 13.9625 0.221
slr0513 Forward -202 -183 13.9625 0.221
sll0785 Forward -26 -7 12.9791 0.265
ssr1558 Forward -72 -53 16.4207 0.221
ssr6026 Forward -283 -264 14.5524 0.221
ssr6085 Forward -283 -264 14.5524 0.221
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

1.000  0.000  0.000  0.000  
0.250 0.375 0.375 0.000
0.375 0.625 0.000 0.000
0.875 0.000 0.000 0.125
1.000 0.000 0.000 0.000
0.000 0.000 0.000 1.000
0.000 0.000 0.000 1.000
0.250 0.250 0.000 0.500
0.250 0.000 0.375 0.375
0.250 0.375 0.000 0.375
0.000 0.500 0.500 0.000
0.000 0.000 1.000 0.000
1.000 0.000 0.000 0.000
0.125 0.250 0.000 0.625
0.000 0.000 0.250 0.750
0.875 0.000 0.125 0.000
0.500 0.000 0.000 0.500
0.000 0.000 0.000 1.000
0.500 0.250 0.125 0.125
0.750 0.250 0.000 0.000