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Details for NP_440547.1_8

Name NP_440547.1_8
Length 20
Regular expression GT[GC]G[CA][CGT][TC][GT]C[CA][TC][TC][GC][GT][CT]G[CA][TCG]G[GA]
Central No

Motif logo

Genes containing this motif

25 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
sll1058 Forward -349 -330 12.9791 0.298
sll0227 Reverse -284 -303 16.5191 0.195
sll1673 Forward -360 -341 12.6841 0.298
sll1024 Reverse -349 -368 13.0775 0.298
sll1503 Forward -292 -273 12.4875 0.298
slr1879 Reverse -293 -312 14.2574 0.289
sll1687 Reverse -332 -351 16.2241 0.195
sll1624 Reverse -259 -278 12.0942 0.298
sll0857 Reverse -166 -185 11.7992 0.298
sll0848 Forward -118 -99 20.7473 0.105
slr0818 Forward -158 -139 12.5858 0.298
sll1432 Forward -275 -256 15.6341 0.195
slr1534 Reverse -294 -313 15.6341 0.195
sll0364 Reverse -333 -352 14.0608 0.289
sll0055 Reverse -377 -396 11.9958 0.298
slr0483 Reverse -312 -331 13.3725 0.298
sll0609 Reverse -112 -131 12.2908 0.298
slr0582 Forward -257 -238 11.8975 0.298
slr1451 Forward -135 -116 20.7473 0.105
slr0597 Forward -197 -178 12.6841 0.298
sll5002 Forward -364 -345 11.9958 0.298
slr5053 Reverse -351 -370 17.5024 0.195
slr6022 Reverse -17 -36 17.109 0.195
slr6081 Reverse -17 -36 17.109 0.195
6803t15 Forward -251 -232 13.3725 0.298
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.000  0.100  0.900  0.000  
0.000 0.100 0.100 0.800
0.000 0.200 0.700 0.100
0.000 0.000 1.000 0.000
0.400 0.600 0.000 0.000
0.100 0.300 0.300 0.300
0.000 0.300 0.000 0.700
0.000 0.000 0.600 0.400
0.000 0.900 0.000 0.100
0.300 0.600 0.100 0.000
0.000 0.200 0.000 0.800
0.000 0.400 0.000 0.600
0.000 0.300 0.700 0.000
0.000 0.000 0.700 0.300
0.000 0.600 0.100 0.300
0.000 0.000 1.000 0.000
0.400 0.500 0.100 0.000
0.000 0.200 0.200 0.600
0.000 0.000 1.000 0.000
0.200 0.000 0.800 0.000