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Details for NP_440544.1_6

Name NP_440544.1_6
Length 15
Regular expression T[TA]T[GC]T[TA]T[GA][GT]C[TA][GT]TCC
Central Yes

Motif logo

Genes containing this motif

3 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
sll1581 Forward -239 -225 22.615 0.0351
slr1702 Reverse -238 -252 22.615 0.0351
slr0552 Forward -36 -22 21.3367 0.0822
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.000  0.000  0.000  1.000  
0.286 0.000 0.000 0.714
0.000 0.000 0.000 1.000
0.000 0.286 0.714 0.000
0.000 0.000 0.143 0.857
0.429 0.000 0.000 0.571
0.000 0.143 0.143 0.714
0.286 0.000 0.714 0.000
0.000 0.000 0.714 0.286
0.000 1.000 0.000 0.000
0.429 0.000 0.000 0.571
0.000 0.000 0.571 0.429
0.000 0.000 0.000 1.000
0.000 1.000 0.000 0.000
0.000 0.857 0.000 0.143