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Details for NP_440520.1_4

Name NP_440520.1_4
Length 20
Regular expression GA[GT]GT[GT]CC[CA]ATT[AC]T[ACT]TTTTG
Central No

Motif logo

Genes containing this motif

5 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
sll1401 Forward -113 -94 11.9958 0.117
sll1293 Forward -173 -154 28.8104 0.00117
sll0248 Forward -213 -194 18.7807 0.0282
sll1086 Reverse -287 -306 10.2259 0.21
slr0049 Forward -386 -367 18.3873 0.0282
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.167  0.000  0.833  0.000  
0.833 0.167 0.000 0.000
0.000 0.000 0.667 0.333
0.167 0.000 0.833 0.000
0.000 0.000 0.000 1.000
0.000 0.000 0.500 0.500
0.000 1.000 0.000 0.000
0.000 1.000 0.000 0.000
0.333 0.500 0.167 0.000
1.000 0.000 0.000 0.000
0.000 0.000 0.000 1.000
0.000 0.000 0.000 1.000
0.500 0.333 0.167 0.000
0.000 0.000 0.000 1.000
0.333 0.333 0.000 0.333
0.000 0.000 0.000 1.000
0.000 0.000 0.000 1.000
0.000 0.167 0.000 0.833
0.000 0.000 0.000 1.000
0.000 0.000 1.000 0.000