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Details for NP_440497.1_6

Name NP_440497.1_6
Length 20
Regular expression CTCAA[GA]GC[CG]ATGGG[GT]GCCGA
Central No

Motif logo

Genes containing this motif

122 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
slr1319 Forward -116 -97 -6.29373 0.264
slr1489 Reverse -247 -266 -5.80207 0.264
sll1060 Forward -345 -326 1.27776 0.239
ssl2069 Forward -158 -139 1.27776 0.239
ssr1853 Reverse -111 -130 1.27776 0.239
slr0731 Forward -20 -1 -6.29373 0.264
slr0744 Reverse -293 -312 -6.98204 0.269
sll0220 Forward -98 -79 -0.4922 0.264
sll1039 Reverse -173 -192 -5.01543 0.264
slr1776 Forward -236 -217 -6.88371 0.269
slr1787 Reverse -197 -216 4.62101 0.227
slr1795 Forward -289 -270 4.32602 0.227
slr1302 Forward -32 -13 -7.4737 0.292
slr0965 Forward -246 -227 -5.60541 0.264
slr0977 Reverse -81 -100 1.27776 0.239
sll1020 Reverse -199 -218 -4.32711 0.264
sll0638 Reverse -256 -275 -6.78538 0.269
sll1513 Forward -306 -287 -3.83545 0.264
ssr2711 Forward -177 -158 -6.68705 0.269
sll1636 Forward -248 -229 -6.58872 0.264
slr1770 Reverse -45 -64 -6.58872 0.264
slr2041 Forward -356 -337 4.52268 0.227
sll1937 Forward -190 -171 -7.57203 0.298
slr1918 Reverse -223 -242 -3.73712 0.264
slr1702 Forward -79 -60 -4.72043 0.264
sll1921 Reverse -281 -300 -1.47551 0.264
sll1805 Forward -235 -216 -5.11376 0.264
sll1792 Reverse -296 -315 -7.08038 0.269
sll1787 Reverse -266 -285 -6.1954 0.264
slr1196 Forward -234 -215 -4.03212 0.264
sll1730 Forward -100 -81 -5.60541 0.264
slr1834 Reverse -316 -335 -5.60541 0.264
slr1751 Reverse -379 -398 -5.60541 0.264
slr1218 Reverse -343 -362 -6.29373 0.264
slr1236 Reverse -20 -39 -7.4737 0.292
sll0869 Forward -100 -81 10.2259 0.227
sll0862 Forward -80 -61 3.34271 0.239
sll1763 Reverse -196 -215 -4.32711 0.264
slr1805 Reverse -267 -286 -6.88371 0.269
sll1695 Reverse -193 -212 -6.98204 0.269
slr1743 Forward -333 -314 1.86774 0.239
slr1743 Reverse -239 -258 -4.72043 0.264
sll0846 Reverse -64 -83 -6.29373 0.264
slr0862 Forward -126 -107 -6.29373 0.264
slr1246 Reverse -301 -320 -7.08038 0.269
sll1150 Forward -58 -39 -2.55715 0.264
slr1253 Reverse -84 -103 -2.55715 0.264
slr1255 Forward -132 -113 -6.29373 0.264
slr1257 Reverse -276 -295 2.94938 0.239
sll1615 Forward -377 -358 -4.72043 0.264
slr1720 Forward -321 -302 -5.50708 0.264
slr1724 Forward -381 -362 -1.47551 0.264
slr0262 Forward -390 -371 -6.09707 0.264
slr2089 Forward -188 -169 -4.72043 0.264
ssr2201 Forward -349 -330 -5.9004 0.264
sll1242 Forward -288 -269 -6.58872 0.264
sll1890 Reverse -341 -360 -5.99873 0.264
sll1378 Reverse -118 -137 -4.32711 0.264
slr1270 Reverse -107 -126 -5.11376 0.264
sll1174 Reverse -56 -75 -2.65548 0.264
sll1432 Reverse -291 -310 -4.91709 0.264
slr1534 Forward -278 -259 -4.91709 0.264
slr1676 Forward -313 -294 -4.91709 0.264
slr1693 Forward -353 -334 -3.83545 0.264
slr0945 Reverse -375 -394 -5.99873 0.264
slr0950 Forward -371 -352 -3.63879 0.264
slr1641 Forward -294 -275 -7.67036 0.299
ssr0657 Reverse -29 -48 -5.99873 0.264
slr0146 Reverse -228 -247 -7.67036 0.299
sll1858 Reverse -354 -373 -6.78538 0.269
sll1852 Forward -108 -89 -7.08038 0.269
slr0333 Forward -269 -250 -5.01543 0.264
sll0162 Forward -90 -71 -5.01543 0.264
slr0179 Reverse -145 -164 -5.01543 0.264
sll0158 Reverse -96 -115 -5.70374 0.264
slr0361 Forward -220 -201 -5.70374 0.264
slr0216 Forward -368 -349 -6.29373 0.264
sll0207 Forward -367 -348 -6.78538 0.269
slr0233 Reverse -297 -316 -6.98204 0.269
ssl0788 Forward -30 -11 0.884433 0.25
sll0404 Forward -254 -235 -7.67036 0.299
slr0440 Reverse -180 -199 3.83436 0.227
slr0058 Reverse -90 -109 -5.70374 0.264
slr0483 Forward -246 -227 3.83436 0.227
slr0495 Reverse -218 -237 -5.50708 0.264
slr0191 Forward -349 -330 -3.44213 0.264
slr0193 Reverse -121 -140 -2.65548 0.264
sll0184 Forward -395 -376 -5.50708 0.264
sll0833 Reverse -96 -115 -4.13045 0.264
slr0842 Forward -208 -189 -5.11376 0.264
sll0823 Forward -202 -183 3.93269 0.227
slr0084 Reverse -237 -256 -2.45882 0.264
sll0474 Forward -281 -262 -7.17871 0.275
sll0588 Forward -86 -67 -5.80207 0.264
slr0109 Reverse -157 -176 2.65439 0.239
slr0790 Forward -238 -219 5.89931 0.227
sll0788 Forward -246 -227 -7.08038 0.269
slr0800 Reverse -296 -315 -7.08038 0.269
slr0707 Reverse -29 -48 -4.81876 0.264
sll0659 Reverse -311 -330 2.26107 0.239
sll0044 Forward -142 -123 -3.93378 0.264
sll0535 Forward -178 -159 -6.09707 0.264
sll1495 Reverse -370 -389 2.0644 0.239
sll1483 Forward -378 -359 -4.52377 0.264
sll1479 Forward -389 -370 -5.70374 0.264
slr1585 Forward -210 -191 -1.47551 0.264
sll0574 Forward -250 -231 -6.1954 0.264
slr0598 Forward -145 -126 -1.08219 0.264
sll5052 Reverse -210 -229 -5.11376 0.264
slr5054 Reverse -130 -149 -6.09707 0.264
slr5073 Forward -377 -358 4.42435 0.227
slr5073 Reverse -298 -317 -6.88371 0.269
ssr7018 Forward -381 -362 -6.58872 0.264
ssr7018 Forward -308 -289 -6.58872 0.264
ssr7018 Forward -236 -217 -6.58872 0.264
ssr7018 Forward -164 -145 -6.58872 0.264
ssr7018 Forward -92 -73 -6.58872 0.264
ssr7018 Forward -23 -4 -6.58872 0.264
ssl7019 Reverse -337 -356 -6.58872 0.264
ssl7019 Reverse -263 -282 -6.58872 0.264
ssl7019 Reverse -185 -204 -6.58872 0.264
ssl7019 Reverse -111 -130 -6.58872 0.264
ssl7019 Reverse -37 -56 -6.58872 0.264
ssl7020 Reverse -338 -357 -6.58872 0.264
ssl7020 Reverse -264 -283 -6.58872 0.264
ssl7020 Reverse -191 -210 -6.58872 0.264
ssl7020 Reverse -121 -140 -6.58872 0.264
ssl7020 Reverse -48 -67 -6.58872 0.264
ssl7021 Reverse -100 -119 -6.58872 0.264
ssl7021 Reverse -32 -51 -6.58872 0.264
slr7023 Forward -387 -368 -6.58872 0.264
ssl7074 Forward -131 -112 -6.58872 0.264
slr6050 Reverse -90 -109 -7.4737 0.292
6803t26 Reverse -117 -136 -7.08038 0.269
6803t27 Forward -303 -284 -4.6221 0.264
6803t29 Forward -236 -217 -5.50708 0.264
6803t40 Forward -236 -217 -5.50708 0.264
6803t42 Reverse -142 -161 2.0644 0.239
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.000  1.000  0.000  0.000  
0.000 0.000 0.000 1.000
0.000 0.833 0.167 0.000
0.833 0.167 0.000 0.000
0.833 0.000 0.167 0.000
0.333 0.000 0.667 0.000
0.167 0.000 0.833 0.000
0.000 1.000 0.000 0.000
0.000 0.667 0.333 0.000
1.000 0.000 0.000 0.000
0.000 0.000 0.000 1.000
0.000 0.000 1.000 0.000
0.000 0.000 1.000 0.000
0.000 0.000 1.000 0.000
0.000 0.167 0.500 0.333
0.000 0.000 1.000 0.000
0.000 1.000 0.000 0.000
0.000 0.667 0.167 0.167
0.000 0.000 1.000 0.000
1.000 0.000 0.000 0.000