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Details for NP_440463.1_6

Name NP_440463.1_6
Length 20
Regular expression CA[CA]G[CA]CG[ACGTA][TC][CAT][GCT]C[CT][TA]CT[GC]C[TA][CT]
Central No

Motif logo

Genes containing this motif

59 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
sll1052 Reverse -149 -168 8.75091 0.25
slr1128 Reverse -232 -251 7.47261 0.27
slr0238 Forward -128 -109 6.09597 0.295
sml0003 Reverse -226 -245 17.994 0.0474
slr1776 Forward -318 -299 17.994 0.0474
sll1198 Forward -65 -46 8.35759 0.256
slr1619 Forward -218 -199 8.35759 0.256
sll1009 Reverse -351 -370 15.6341 0.0619
slr1055 Forward -137 -118 15.6341 0.0619
slr1911 Reverse -349 -368 8.75091 0.25
sll1583 Reverse -27 -46 6.4893 0.295
sll1571 Reverse -149 -168 5.99764 0.299
slr1145 Reverse -199 -218 9.43923 0.239
sll1965 Reverse -294 -313 6.29264 0.295
slr2076 Forward -237 -218 6.29264 0.295
slr1220 Forward -21 -2 6.98095 0.295
sll0867 Forward -300 -281 20.1573 0.0474
sll1755 Reverse -13 -32 6.58763 0.295
slr1887 Forward -64 -45 6.58763 0.295
sll2014 Forward -93 -74 8.94757 0.25
sll2012 Forward -256 -237 12.5858 0.157
slr2136 Reverse -245 -264 12.1925 0.157
sll1164 Reverse -106 -125 9.93088 0.224
slr2060 Forward -61 -42 11.3075 0.178
sll0244 Forward -337 -318 11.8975 0.158
slr2098 Reverse -315 -334 8.06259 0.256
slr2121 Reverse -336 -355 6.4893 0.295
sll1228 Reverse -87 -106 17.109 0.0474
slr1329 Forward -146 -127 17.109 0.0474
sll1892 Reverse -280 -299 10.8159 0.195
sll1387 Forward -353 -334 6.39097 0.295
slr1467 Forward -182 -163 6.39097 0.295
sll1378 Forward -331 -312 7.96426 0.257
slr1288 Reverse -82 -101 7.7676 0.259
slr1160 Forward -295 -276 18.584 0.0474
slr1173 Forward -261 -242 6.78429 0.295
ssl0312 Reverse -77 -96 19.3707 0.0474
sll0336 Forward -30 -11 7.17762 0.29
sll0755 Forward -80 -61 17.5024 0.0474
slr0055 Reverse -352 -371 15.6341 0.0619
sll0603 Forward -386 -367 15.7324 0.0619
slr0645 Reverse -201 -220 8.06259 0.256
slr0650 Reverse -261 -280 9.14423 0.249
sll0887 Forward -394 -375 8.06259 0.256
slr0836 Reverse -367 -386 18.1907 0.0474
sll0596 Forward -369 -350 10.5209 0.202
slr0312 Forward -320 -301 6.09597 0.295
slr0797 Forward -138 -119 12.0942 0.157
slr0698 Reverse -116 -135 6.39097 0.295
sll0047 Reverse -101 -120 12.0942 0.157
sll0040 Forward -27 -8 8.65258 0.25
sll0033 Reverse -105 -124 7.07928 0.292
slr1560 Forward -331 -312 6.78429 0.295
slr0755 Forward -210 -191 7.57094 0.268
slr1661 Forward -25 -6 6.09597 0.295
sll5097 Reverse -87 -106 7.86593 0.258
sll7006 Forward -303 -284 14.9458 0.0718
ssl7007 Forward -76 -57 14.9458 0.0718
6803t17 Forward -396 -377 6.19431 0.295
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.000  1.000  0.000  0.000  
0.875 0.125 0.000 0.000
0.250 0.750 0.000 0.000
0.000 0.000 1.000 0.000
0.375 0.500 0.125 0.000
0.000 1.000 0.000 0.000
0.125 0.000 0.875 0.000
0.250 0.250 0.250 0.250
0.000 0.250 0.000 0.750
0.250 0.500 0.000 0.250
0.000 0.250 0.500 0.250
0.000 1.000 0.000 0.000
0.000 0.750 0.000 0.250
0.250 0.000 0.000 0.750
0.000 1.000 0.000 0.000
0.000 0.000 0.000 1.000
0.000 0.375 0.625 0.000
0.125 0.875 0.000 0.000
0.250 0.000 0.000 0.750
0.000 0.500 0.125 0.375