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Details for NP_440440.1_2

Name NP_440440.1_2
Length 20
Regular expression A[AT][CG][CG]CC[GAT][GT][TC][GT]CCG[CT]C[AG][AC]C[AG]C
Central Yes

Motif logo

Genes containing this motif

51 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
sll1209 Forward -263 -244 14.9449 0.256
slr0722 Reverse -25 -44 13.6666 0.282
slr1791 Forward -69 -50 14.5516 0.261
slr1794 Reverse -260 -279 15.8299 0.237
sll0932 Forward -176 -157 14.3549 0.267
sll1513 Forward -78 -59 13.0766 0.288
sll1001 Forward -136 -117 25.3679 0.00679
sll1934 Forward -298 -279 21.828 0.0493
sll1571 Reverse -255 -274 13.5683 0.282
sll1926 Forward -230 -211 13.47 0.282
sll1817 Forward -110 -91 14.8466 0.256
slr1203 Forward -283 -264 14.7483 0.256
slr1230 Forward -275 -256 13.6666 0.282
ssr3189 Reverse -314 -333 19.2715 0.123
slr1742 Reverse -312 -331 16.4199 0.225
slr1744 Reverse -217 -236 14.6499 0.258
slr1250 Forward -146 -127 13.175 0.282
slr1993 Reverse -217 -236 15.5349 0.237
slr1522 Reverse -232 -251 14.1583 0.273
slr0813 Reverse -226 -245 13.8633 0.282
slr1347 Forward -207 -188 20.3531 0.0807
slr1349 Reverse -129 -148 13.9616 0.281
sll1891 Reverse -209 -228 15.6332 0.237
ssr2799 Forward -185 -166 15.7316 0.237
sll0273 Forward -305 -286 16.9115 0.217
sll0270 Reverse -332 -351 14.4533 0.264
slr0395 Reverse -323 -342 13.9616 0.281
slr0163 Reverse -116 -135 17.6982 0.163
slr0366 Forward -290 -271 14.7483 0.256
sll0759 Forward -123 -104 16.1249 0.233
slr1000 Forward -367 -348 13.3716 0.282
sll0204 Reverse -263 -282 17.7965 0.163
ssl0788 Forward -290 -271 13.5683 0.282
sll0062 Reverse -189 -208 15.0432 0.256
sll0062 Forward -212 -193 13.175 0.282
sll0055 Forward -369 -350 17.7965 0.163
sll0614 Forward -108 -89 16.3215 0.225
sll0382 Reverse -154 -173 15.9282 0.237
ssr1513 Forward -176 -157 13.3716 0.282
sll0798 Reverse -85 -104 16.5182 0.225
slr0794 Reverse -148 -167 16.8132 0.217
sll0900 Reverse -110 -129 13.3716 0.282
sll0630 Forward -341 -322 13.6666 0.282
sll1489 Reverse -137 -156 20.2548 0.0807
sll0733 Forward -300 -281 14.2566 0.27
slr1187 Forward -310 -291 14.9449 0.256
slr0588 Forward -341 -322 21.7297 0.0493
sll5084 Forward -58 -39 14.9449 0.256
ssl7039 Forward -239 -220 13.2733 0.282
slr7041 Reverse -121 -140 13.2733 0.282
slr6011 Forward -247 -228 17.6982 0.163
slr6070 Forward -247 -228 17.6982 0.163
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.846  0.077  0.077  0.000  
0.692 0.000 0.077 0.231
0.077 0.692 0.231 0.000
0.000 0.615 0.308 0.077
0.000 0.846 0.154 0.000
0.000 0.846 0.000 0.154
0.308 0.000 0.385 0.308
0.077 0.000 0.462 0.462
0.000 0.385 0.000 0.615
0.000 0.077 0.615 0.308
0.000 0.846 0.077 0.077
0.000 0.692 0.154 0.154
0.077 0.154 0.769 0.000
0.000 0.462 0.154 0.385
0.077 0.692 0.077 0.154
0.538 0.000 0.462 0.000
0.538 0.462 0.000 0.000
0.000 1.000 0.000 0.000
0.692 0.000 0.308 0.000
0.000 0.923 0.077 0.000