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Details for NP_440439.1_6

Name NP_440439.1_6
Length 20
Regular expression AATTGT[GA]AA[CG]T[CT]T[TC][TC][TG][AC]A[AC][CA]
Central No

Motif logo

Genes containing this motif

39 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
slr0611 Forward -44 -25 1.27776 0.286
slr1116 Reverse -304 -323 17.3057 0.03
ssl1326 Forward -28 -9 2.0644 0.277
slr0734 Reverse -269 -288 2.0644 0.277
sll1037 Forward -82 -63 4.03102 0.242
sll0934 Reverse -151 -170 3.34271 0.242
slr2052 Forward -142 -123 29.8921 0.000794
sll1797 Forward -224 -205 1.47442 0.286
ssl2233 Forward -56 -37 1.47442 0.286
ssr2047 Forward -341 -322 2.94938 0.267
sll1774 Reverse -377 -396 2.55606 0.277
sll2012 Forward -353 -334 17.0107 0.03
slr2120 Forward -25 -6 1.17943 0.286
sll1239 Forward -350 -331 1.17943 0.286
slr1322 Reverse -96 -115 1.17943 0.286
sll1233 Forward -375 -356 1.37609 0.286
sll1250 Forward -319 -300 7.17762 0.242
sll1852 Forward -43 -24 4.42435 0.242
slr0021 Reverse -40 -59 1.67108 0.278
slr0193 Forward -84 -65 2.55606 0.277
slr0903 Reverse -36 -55 2.94938 0.267
sll0586 Forward -83 -64 4.12936 0.242
slr0623 Reverse -281 -300 4.12936 0.242
sll0658 Forward -348 -329 5.01433 0.242
ssl1255 Forward -82 -63 5.01433 0.242
sll1479 Reverse -30 -49 2.55606 0.277
sll1552 Forward -343 -324 1.96607 0.277
sll5006 Forward -251 -232 1.86774 0.277
sll5090 Forward -251 -232 1.86774 0.277
sll5097 Forward -347 -328 3.34271 0.242
ssl5098 Forward -76 -57 3.34271 0.242
ssr7036 Reverse -133 -152 1.67108 0.278
sll7090 Forward -145 -126 3.73603 0.242
slr7092 Reverse -344 -363 3.73603 0.242
ssr6003 Forward -251 -232 1.86774 0.277
ssr6046 Forward -76 -57 3.34271 0.242
slr6047 Forward -286 -267 3.34271 0.242
slr6063 Forward -251 -232 1.86774 0.277
6803t26 Reverse -182 -201 4.42435 0.242
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

1.000  0.000  0.000  0.000  
1.000 0.000 0.000 0.000
0.000 0.000 0.000 1.000
0.000 0.000 0.000 1.000
0.000 0.000 1.000 0.000
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0.250 0.000 0.750 0.000
1.000 0.000 0.000 0.000
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0.000 0.500 0.500 0.000
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0.000 0.750 0.000 0.250
0.000 0.000 0.000 1.000
0.000 0.250 0.000 0.750
0.000 0.250 0.000 0.750
0.000 0.000 0.250 0.750
0.750 0.250 0.000 0.000
1.000 0.000 0.000 0.000
0.750 0.250 0.000 0.000
0.250 0.750 0.000 0.000