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Details for NP_440411.1_4

Name NP_440411.1_4
Length 20
Regular expression GA[AG]AA[CT][CT]T[GC]A[AG][CT]T[AT][TC]GG[CT][CT]T
Central Yes

Motif logo

Genes containing this motif

33 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
sll1030 Forward -122 -103 14.5524 0.123
sll1028 Forward -194 -175 17.2074 0.0789
sll1682 Reverse -72 -91 7.7676 0.231
slr1779 Forward -90 -71 7.7676 0.231
slr2034 Forward -175 -156 27.3355 0.00288
sll1834 Reverse -65 -84 9.43923 0.181
sll1459 Forward -64 -45 17.5024 0.0789
slr1549 Reverse -66 -85 17.5024 0.0789
sll0873 Forward -277 -258 9.3409 0.181
slr0881 Reverse -164 -183 9.3409 0.181
slr1724 Forward -357 -338 8.45592 0.211
slr0269 Reverse -176 -195 10.7175 0.181
slr0272 Reverse -161 -180 8.16093 0.217
sll1983 Forward -332 -313 10.0292 0.181
sll0428 Forward -317 -298 9.63589 0.181
ssr0756 Reverse -342 -361 9.63589 0.181
slr0287 Reverse -59 -78 15.5357 0.106
slr0149 Reverse -72 -91 15.2408 0.106
slr1945 Forward -266 -247 11.3075 0.181
slr0323 Forward -293 -274 8.94757 0.189
slr0476 Reverse -326 -345 16.4207 0.0892
sll0611 Reverse -113 -132 10.6192 0.181
slr0636 Forward -143 -124 10.6192 0.181
sll0825 Forward -95 -76 9.24257 0.181
ssr1425 Reverse -2 -21 9.24257 0.181
slr0844 Reverse -369 -388 9.24257 0.181
slr0519 Forward -296 -277 9.53756 0.181
sll0668 Forward -345 -326 10.0292 0.181
slr1579 Forward -179 -160 11.9958 0.181
sll0431 Reverse -141 -160 10.0292 0.181
slr0462 Forward -212 -193 10.0292 0.181
slr7100 Forward -257 -238 10.5209 0.181
sll8049 Forward -386 -367 8.35759 0.211
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.000  0.000  1.000  0.000  
1.000 0.000 0.000 0.000
0.500 0.050 0.450 0.000
1.000 0.000 0.000 0.000
1.000 0.000 0.000 0.000
0.000 0.650 0.000 0.350
0.000 0.700 0.000 0.300
0.000 0.000 0.000 1.000
0.100 0.350 0.450 0.100
0.750 0.100 0.150 0.000
0.750 0.000 0.250 0.000
0.100 0.500 0.050 0.350
0.000 0.000 0.000 1.000
0.800 0.000 0.000 0.200
0.000 0.450 0.000 0.550
0.000 0.000 1.000 0.000
0.000 0.000 1.000 0.000
0.050 0.550 0.150 0.250
0.050 0.550 0.000 0.400
0.000 0.000 0.000 1.000