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Details for NP_440349.1_3

Name NP_440349.1_3
Length 20
Regular expression [GT]C[GC]AT[CT][GA][ACT][CT][GA][CT][TG]G[AC]T[CTA]C[CAG][AG][CGT]
Central Yes

Motif logo

Genes containing this motif

97 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
slr0613 Forward -96 -77 16.7149 0.155
sll1214 Reverse -188 -207 10.4217 0.283
slr1316 Forward -125 -106 9.53674 0.299
sll1049 Forward -307 -288 13.175 0.25
slr1102 Reverse -330 -349 10.1267 0.287
sll1031 Reverse -167 -186 10.7167 0.283
sll1664 Forward -323 -304 14.7483 0.208
slr1079 Reverse -21 -40 20.1564 0.0755
sll1022 Reverse -127 -146 18.3865 0.0961
sll1022 Forward -134 -115 13.9616 0.222
sll1022 Reverse -369 -388 12.29 0.278
slr1400 Forward -345 -326 9.63507 0.299
sll1501 Reverse -100 -119 19.0748 0.0891
sll1501 Reverse -106 -125 11.2084 0.282
slr1045 Forward -280 -261 21.0414 0.06
slr2048 Reverse -98 -117 11.3067 0.282
sll1934 Forward -310 -291 11.6017 0.282
sll0980 Forward -112 -93 11.3067 0.282
sll1577 Forward -197 -178 10.52 0.283
slr2016 Forward -399 -380 11.6017 0.282
sll1913 Reverse -122 -141 10.52 0.283
slr1137 Reverse -219 -238 10.6184 0.283
slr1148 Forward -366 -347 12.88 0.257
sll1070 Reverse -295 -314 15.4366 0.18
sll1817 Reverse -154 -173 9.7334 0.299
sll1805 Forward -118 -99 12.0933 0.282
slr1895 Reverse -154 -173 11.11 0.282
slr1899 Forward -160 -141 16.2232 0.173
sll1737 Forward -148 -129 9.7334 0.299
slr1828 Reverse -102 -121 9.7334 0.299
slr1830 Forward -345 -326 15.4366 0.18
sll1726 Forward -149 -130 15.5349 0.18
sll1716 Forward -347 -328 11.11 0.282
sll1457 Reverse -231 -250 11.0117 0.282
sll1144 Reverse -5 -24 9.83173 0.299
slr1218 Forward -152 -133 9.83173 0.299
ssr2060 Reverse -197 -216 10.52 0.283
slr1436 Forward -290 -271 10.1267 0.287
ssr2422 Forward -50 -31 12.585 0.269
slr0878 Forward -151 -132 11.0117 0.282
sll0868 Forward -52 -33 17.5015 0.123
sll1317 Forward -279 -260 11.6017 0.282
slr1880 Reverse -353 -372 9.63507 0.299
slr1886 Reverse -303 -322 10.0284 0.291
slr2136 Reverse -288 -307 10.4217 0.283
sll0856 Reverse -374 -393 11.3067 0.282
ssr2078 Forward -297 -278 9.53674 0.299
slr1255 Reverse -362 -381 13.6666 0.23
slr1255 Forward -384 -365 9.53674 0.299
slr1717 Forward -334 -315 10.52 0.283
ssl2789 Forward -274 -255 19.0748 0.0891
slr2125 Reverse -299 -318 9.83173 0.299
sll1258 Forward -57 -38 15.6332 0.18
slr1340 Reverse -54 -73 10.4217 0.283
slr1174 Forward -250 -231 10.9134 0.283
slr0940 Reverse -254 -273 14.3549 0.218
sll0257 Reverse -222 -241 13.9616 0.222
ssr0657 Reverse -371 -390 20.8447 0.06
slr1942 Forward -393 -374 12.29 0.278
ssr3304 Forward -290 -271 12.4867 0.272
slr1951 Forward -347 -328 13.175 0.25
slr0171 Forward -281 -262 11.5033 0.282
slr0388 Forward -78 -59 18.7798 0.0923
sll0762 Forward -261 -242 10.7167 0.283
slr0007 Forward -323 -304 10.9134 0.283
slr0009 Reverse -330 -349 13.175 0.25
sll0204 Reverse -260 -279 11.0117 0.282
ssl0788 Forward -24 -5 14.4533 0.218
sll0404 Forward -380 -361 10.7167 0.283
sll0454 Reverse -381 -400 12.7816 0.257
sll0685 Reverse -372 -391 11.7983 0.282
sll0614 Forward -204 -185 22.6147 0.028
ssl0353 Reverse -169 -188 12.7816 0.257
slr0208 Reverse -336 -355 23.303 0.0232
sll0178 Reverse -132 -151 12.88 0.257
sll0891 Forward -177 -158 14.0599 0.222
ssr1425 Reverse -259 -278 18.2882 0.0961
sll0480 Reverse -86 -105 10.2251 0.283
slr0509 Forward -97 -78 10.2251 0.283
slr0314 Forward -69 -50 13.6666 0.23
sll0781 Reverse -90 -109 10.4217 0.283
sll0657 Reverse -296 -315 10.3234 0.283
sll0744 Forward -147 -128 11.3067 0.282
sll0045 Forward -257 -238 23.598 0.0232
slr0534 Forward -320 -301 10.3234 0.283
slr0536 Reverse -174 -193 15.2399 0.183
sll0902 Forward -50 -31 19.5664 0.0891
slr0925 Forward -177 -158 11.7 0.282
slr1577 Forward -273 -254 11.8967 0.282
slr1653 Reverse -119 -138 11.5033 0.282
sll0569 Forward -146 -127 10.7167 0.283
slr0601 Reverse -220 -239 11.0117 0.282
slr0609 Reverse -342 -361 11.995 0.282
sll5062 Forward -208 -189 11.0117 0.282
sll5080 Reverse -179 -198 11.11 0.282
ssl5113 Forward -93 -74 11.405 0.282
ssl5113 Forward -325 -306 10.2251 0.283
slr5115 Reverse -169 -188 10.2251 0.283
ssl7039 Forward -215 -196 9.53674 0.299
slr7041 Reverse -145 -164 9.53674 0.299
6803t25 Reverse -284 -303 9.63507 0.299
6803t28 Forward -258 -239 10.0284 0.291
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.000  0.000  0.643  0.357  
0.000 1.000 0.000 0.000
0.143 0.214 0.643 0.000
1.000 0.000 0.000 0.000
0.000 0.143 0.000 0.857
0.000 0.429 0.143 0.429
0.214 0.000 0.786 0.000
0.429 0.357 0.000 0.214
0.143 0.357 0.143 0.357
0.214 0.000 0.786 0.000
0.000 0.714 0.000 0.286
0.000 0.071 0.286 0.643
0.071 0.000 0.929 0.000
0.786 0.214 0.000 0.000
0.000 0.143 0.000 0.857
0.214 0.500 0.000 0.286
0.000 1.000 0.000 0.000
0.357 0.429 0.214 0.000
0.571 0.000 0.429 0.000
0.000 0.357 0.357 0.286