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Details for NP_440344.1_1

Name NP_440344.1_1
Length 20
Regular expression [GT]CGG[CA][GC][AT]T[CT]GG[GT]GT[GA][GT]G[CG][TA]G
Central Yes

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Genes containing this motif

16 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
slr0730 Forward -360 -341 10.9142 0.188
sll0220 Forward -270 -251 9.3409 0.23
sll0926 Forward -57 -38 10.3242 0.188
slr1887 Forward -141 -122 12.9791 0.133
slr1673 Forward -158 -139 8.65258 0.26
ssr2754 Reverse -250 -269 7.27595 0.272
slr0357 Forward -326 -307 10.7175 0.188
slr0416 Forward -153 -134 20.354 0.0417
sll0183 Forward -81 -62 13.3725 0.133
sll0597 Reverse -28 -47 7.27595 0.272
sll0586 Forward -186 -167 16.1257 0.08
slr0623 Reverse -178 -197 16.1257 0.08
sll0727 Forward -281 -262 8.16093 0.272
slr0594 Reverse -201 -220 7.27595 0.272
slr0598 Reverse -296 -315 7.7676 0.272
ssl8008 Forward -343 -324 7.07928 0.272
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.000  0.000  0.778  0.222  
0.000 1.000 0.000 0.000
0.000 0.111 0.889 0.000
0.000 0.000 1.000 0.000
0.222 0.778 0.000 0.000
0.000 0.333 0.556 0.111
0.667 0.000 0.000 0.333
0.000 0.000 0.111 0.889
0.000 0.667 0.000 0.333
0.000 0.111 0.889 0.000
0.000 0.000 1.000 0.000
0.000 0.000 0.556 0.444
0.000 0.000 1.000 0.000
0.000 0.000 0.111 0.889
0.333 0.000 0.667 0.000
0.000 0.000 0.778 0.222
0.000 0.000 1.000 0.000
0.111 0.556 0.333 0.000
0.333 0.000 0.000 0.667
0.000 0.000 1.000 0.000